MmuINT0052930 @ mm9
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62217334-62223299:-
Coord C1 exon
chr2:62223231-62223299
Coord A exon
chr2:62217387-62223230
Coord C2 exon
chr2:62217334-62217386
Length
5844 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
ATGTCTGATTTCTTTTGCAGCAA
3' ss Score
10.16
Exon sequences
Seq C1 exon
GAAAGCTTTGGATATCATTCAGTGTCACCTGACCGACTGTTTGTTCTCTTGGAATACAACTACGTGAAG
Seq A exon
GTAAAGGAAATGCTTTCTCATGTGATATTCTAAAATCCTGCAAATATGTTATTTTTTTAACTGACTTCAGGTATATGCGTACTTGAAGATAACATCTAATAATGCCACTGACAGAAAAATTCCTTCAGTATGCATCAAATATATGTTCCCTTTTATACGTGACAAATTTACTGGGTATATCTAAAGGAATATATTTGAATGATTTCAAGTACTAAAAGGAACAATTAATACATTAGGAATATTAATGACATAGCTTAATAAGATTTATCATAGGAGTTTATGATCTAACTTTAAAGTAACTTTGTGTCTGACTTGCACACACAGGATCTAGTCCTGTGCCTCCCTCTTCTCGGCCTATGTATATAGTATGACCTTCAATAAGTACTTGCTTTTAAGGTGTTATCATCCTCATCTTCTAGAAGAGAATCTGGACAAAGCCAAAGACTAAATCCCAACCTTATTCAAGCCAATCTTGAATGGAGCTTAGGTCTAGTCACAAAGGCTCTACTGAGATCACTCAGCGTCTCCCAGTCACCTATGGAACATAGAGTTTTCAAACATTTAAAAAAATGTTATCATCAAATTGCACATCGTCATGGTCACCAGGCACTTTACCTGAGCTTTTATTATTTTTATTTTTATTTTATTTTTTGAGTTGACAACAGCTGTCAACTATAGAGACTTTTTTTTTACTTTTTTAAATTGATATTTCCCTTTCCTGATTTCTTCTCCAAAAACCCACTACCCCCCCCCCAGCCCCCATCCCACTCCTGCTCACCAACCCACCCACTCCCCCTTCCTGGCCCTTGCATTCCCCTATACTGGAGCACAGAACCTTCACAGAACCAAGGGACTCTCCTCCCATTGATGACCGATTAGGCCACCCTTTGCTAAATATGCAGCTGGAGCCATGAGTCCGACTATGTGTTTTCTTTGATTGGTGATTCACTCCCAGGGAGCTCTGGGGGTACTGGCTAGTTCATATTGTTGTTCCTTCTAGGGGTATGCAAACCCCTTCAGCTCCTTGGGTACTTTCTATAGAGACATTTTTTTAAAATTATTTTATTTATTTGTGTTTCAAATTTTCTCTCCCTTCCCAGGCTCCCCTCCATGACCCCCCAATCCCCTTCACCTCTAAGAGGGTGTTCCCCACTTACCCACTCCTGCCTCACCCCTCTAGCATCCTTCTTCTCTGGAGCATTACGCTTCCACAGGATCAAGCGCCTCCCTTCTCACTGATGCCAGATAAGGCCATCCTCTGCTACATATGTAGCCAACCCTAGTTGGTGGTTTAGTCTTTGAGACCTCTGGGGGGGGGGGGGGAGGCGGTATCCAGTTAATCACTATTGTTGTTCTTCCTATGGAGTTGCAATCCTCTTCAGCTCCTTCAGTCTTTCCTCTAACTCTCCCACTGGGGTCCCAGGGCTCAGTCCAATGGTTGGCTGTGAGTATCTGCATCTGCCTTAGTTGGGGGCTGGCAGAGCCTCTCAGAAGGCAGCCATACCAGGCTCCTGTCTGCAAGCACATCTTGGTATCAGCAATAGTGTAGGGGTTTGGTGTCTATGGATGGGATGGATTCAGAGACCACCCTACCCTTGGGATCCATCCTATCTGTATAGAGAATTTTAAAATGGGTTGGAAGGACTGAAACCCTCTAGAGATACTCTATATGGAAGACAGATTTTTTTTCTCCTGGAATAAATAATGTTGAGTGACCTTATCTATAGACCAACCCAGCTGGACTCTGGCCAAGTCAAACACTCCCTCTTCCCTTTGCCACCTCGGAATGGTGGCACTCCATCATAGTGTTTACCTTGGATCCATCACGTGGGCTTCATTTCCCCATTCTACTAAATCCATCAATTCTAAGCACATTAGATGCCGGTGTCACTTTTACACAACTCTTCTCAGTCATTGCACTTGTGTACATAACTCGGAGCTTCTTATTTCTATCCCCAAAACAAATTTAATTGAGAAAAAAAATTAAATTCCTGCTGCTCAGCTTTAATCAGGCCACCAATCAATCCAAGTTCCTGGGATTGACCTGTTATCAGAATTTTCTATTGGTGTAGACTATTCTAACAAGTAACTGGGGCTGCAAACTGGTGGGTGGCAGTGATGAGTGTTAAAAGCTAATCATGTATGAAGCAGTATGAGAGAACCAGGTCAGCTCACTGTTCCATCTGTATTGACAGGTGTGGTGTGGTACAGTGTCAGATGCAACTCCCTGGCTAGCCCTAGATAATCAAAACCAGGGGTGCATGTTGTCATCCTCGATTTCATGTGCTGTCTAGACTCTTCTATCCAGTCCAGGGAGAAGTCAGTGTGTCTCCTTTACATTCTAATTTAGCTTAAGTTACACCTGTGATAAACTAGACCCTCCAGGGGCGTCTCTTACACAGAATGAGGCAGCGGCATCTCACGGCACTGCAGAGCCTTTGTTGTGAGGATCTCAGTCTGTGAGCTGATGTGTTTGAGGGACACTTCCCTGCCCTGCCCTACTTCAGAGTCACATGGCTCTTTGGTTTTCTCAAGTGTCACTCACACACCCATTCAAGAGCCAAACGAAGCACTTGCTCTCTCCTTCTGCTGGAGCCTTCTTTCCCAGTGTTTTCTGGTTTCTGTCTTCTTTCCTGGCTTGTCCTGGATCATTTTATCATGGCTCCCCATCATTCTCGTCATCCTACAACCATTGCTTCACTCCAGCAAATCCCTTCTTTCATTTTCTTCCTAACATTTATGCTGTTTTGATATTCCTTTACTTATTGCCTGCCATATTTCTTGCCAGTTTCCCTATATTTTAGTCTCTACTGTACTGGACCACAGAGGTGCATGCATGCTTTGTTGTAGAACACTAAATTGTTAGGTAGCTAGCTACAAACAAGGGACTATATCTTCTCTCTCTCTGTCTCTCTCTGTGTCTCTCTCTCTCTGTCTCTGTGTGTCTCTGTCTCTGTCTCTCTGTCTCTGTCTCTCTCTCTTACTTCTGAGAGTATCTAATTTGAGGGCAATAGCATTAACACCTTCAAAAACAGAGAAAAACTTAATTTAATTGCATCTTCTTCTTCCAGTGTTCTTTAGATCCTGTTCCATCACATCTGCAAGCACTATTTCTAAGTTGTAAATAAAAACTAATGAGTGACTGAACACACAGGGGAATGACTAGGCACCCTGCCACCAGTACGGATGTTCTCCTAATATCTCTGCTCCCTGCTGCATACTCTGGAGATGTGACTGTGTTCTCTGTCCCATGCTGATTATGTGTGACGGTCTTGGAAGCACGTCACATGGAAAACGGAAGTTAGCAAAGCAGCTTCTCTGACCTTATAGAGTGGAGACTTTCGTTTTTAGGGTGGGAGACAGCAGAGCTTACCCATTAAGATGGTAATCTTAAACCTTTCTTGTCTTTGCACGTCAGCTTTTATTTTACAGCGTTTCCTCTCCCATTTTCCATGGCAATCATCCACTAAGAACTCAGTCCTAGAATCTTCTTTCCCACAGGTTTCGCTCATGTTCTAGAGCTAATATAGGACCGCATGCTTTCCTTGCCTATTTCTGTCATAGCTCTTGGTACATTTTGTTGTGGTTTCTGTGTTGTAGTGGATGTTCCCATGTGCCCTGTTTAGTTAGGAGACCTTCAGTGGAGGAAAGTGGGGGCACCAGTGCTTATAGACTAAGGCAATTGATAAATCTATTTTATTTTATACCTCATGAAAGCTTTGTCATGATCCCAAGATGATCTCAGTCTTAGTATTTCTAGATTCTACCACACCTTTTGGCTTTGGAAAATATTATGTTTGAGGTTGCCAAGAAACAAACATGGAGTGTGTTCAGTAATCCAGGATCCAGAAAAGGAATGTATGACACATGAGAAATGGGAATTTAATAAATACTTGTTGACATGAGGGTGTAGGAGGCTGAGAAGTGATAAGTAGGTAAGGTTAGGAGCCCTGACTGTGGCTCAGTTTCACTACCTGGCACTCAATTTCCTCCTTATTGACAAAGCTTGAATTTTATTGTAGCTTGGTTTCTGAAACAGTCCTGCATTGTTTGTTCTAAACTCCAGCTATTTAGTAATAGGAAGACTTGCTTTCTTACCCATGCAACTATTCGAGAATACAAATGTGCACCCAAGGAATTTCAAAAGCATCTTTAATTTTATTCACATACACACATAGAAGCGCTTTTTCACAACTGCGAGAGCATACTCATACACATCACATCTCCCTCTCTGTTTTCCCTTAGTTCCCTAAAGTCTAGCATGTTTCCCTCTGTATTTTCTATTAATTCATATGACGCTATGGAAATATATAGGGATCATTTCCAGTTACTGCTTACTCTATTGAAACGGAATGTGCTACCACAGAACTCCTCCTTCTAAGGCATAACTCTAATGCATTTCAAAACCGATAGATAGTATGTTTTGGAGCAGGCTTAGTTTGCTGAAAGTAAGCAAAAGGTACCTACATATGCCCTCACTTTCCTTTCCTGGGTCTTCTCTATAAACATTCTATATTGAGAATGGTACATCTGTGACAATGCAGGAGCAACTACTGACACACTGTTAACTCAAATCTACACTTTTGCACTGGGGTCATTCATGAATTGTGGCAATGTACAGCACATACATTGACAAGCTCTGGAGATGAGAGTTCCTATCGTGGGAAGTACCCTGTCTTCGGTTTGTTCTTCCCTCCCTGCAGCCAAGCACCAATGTCTCCATAGTTTTGCCTTTTCCAAGAAGCCATGTAATAATTTCAGTATGTAACCCTTCTGACTGCTTGATAGTTTTAAAAACTCTGAATGGTATCCTATCCTATCCTCAATCACAATCTAGCAATCCATTCACCCATTACTGAAGGCTGTCTTAGCCGCTGCCATGTTTGGACACTTCTGAGTAAAGCTGTTGTAATCATTTGTCCGTAGGTTTTAAATACTAAGGGATTTGCTGATCAAGTCATTTGGAATTTTCTTTACTCTTACTCATTGATGCCATGTGTTTATTAGCTGTAGGACTATTTCAAGAAAATGTCCTTGTTTCTATGTTTTATGGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTAAAGGTTCATAAGGGTCTCAACCTTTTAATGATTGTAAAGGTCTGTTGTAGTGTCTGTCTCACTTTTCGTTTCTGAAACTGATTTCTTATTTCTCTGATTCGTTAAGTATGTAGTGGTTTTGAGTGTCTGACAGAGCCAGCATTTGACCATTGATTTTCACCATTATATATGTTTTATTTCATACTGGTCTTTACTGGATTGTTTCATTACCTTGAATTTAGTGTGCTGTTCATTTTCAACTACTTGGTTGCTTAACACCAAAGACACACATATATTAATTTTTAACTATATTTTCAGATAGCTTTAAAAATTCCAACAGTAGATATTTATATTAAGTATTCCTCATCATCACTACTTCTGACAAACTAAGAAATATTCTAAATATTTTAGAAGCTATGTGAGTGAAAGGGAAATTTTGAGTTTATTTAAAAACAAAAAACAAAAAACAATAAAAACCAGACATCCTTGCTGTACTGTGCTAGCAATAATATCGCTCAACATCAAAACGGACACCTGGGCCCACAGTAATCCTTTGAAAGATTCTTGAAAGAGGTGATGCAAAAGAGAATAAACTCTTCATGACCTTTTACTGGATGATTTCAAATATGTTTTCAATTCCAAAATTCTAAGAATTTAAGGAATGATAGTACTGTTGAAATTTGAAACTTATGCAATGACCTCTTGCATGCCTGTCATCTTGAGCAAATGGCCAGCCTATTGGAATCCCAGAAGACTGAGATGTCTGATTTCTTTTGCAG
Seq C2 exon
CAATGGAGACATTCCTACACAGCTTCATACAACATTTATGATGTGAATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-Dpp4:NM_010074:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PU(3.8=60.9)
A:
NA
C2:
PF0093016=DPPIV_N=FE(4.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: