GgaINT0048346 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22735295-22735933:+
Coord C1 exon
chr7:22735295-22735348
Coord A exon
chr7:22735349-22735808
Coord C2 exon
chr7:22735809-22735933
Length
460 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GAAGCTCATCTACTTTGCAGAAT
3' ss Score
5.05
Exon sequences
Seq C1 exon
GTACTATATTAGTAATCAAAATGGTGAGATGCCAGGTGGAAGAAATCTTTACAA
Seq A exon
GTAAGAAATTTGTTGTGCACTATGAGTAAAATACCTGCTAATGAAAATGTAATACTTTCTCTTAAACTTTCTACGTTGAAGATTAGGCTGTTCATATTCTGAAGTACCGCCAGTAATAGGATATTTAAATAAAATCGATATAGTAATATAAACTTAAAAAAAAAAACAACAACACTATAGTATTTTTCTGTAATGTTAGTTATTAAAAAACAAACAAGCAAGTTGCCCCTGAAGAAAATCTCACATGCTTTTACTTTTGCTGTGATGATAATTCCAGTATTAACTGAAATTAAAAAAATTAAATCTGCTTGCTTTGCTATTTAAGTCAATAAGAGCTTTACTTTTGAATTTTATCAAATTTCATTTGGTCATCTCATTCAAAAAATATACTTCTCCACATTGTTTTAAAAAAAATAATAATAATCTTTCATCTCTGAGATGAAGCTCATCTACTTTGCAG
Seq C2 exon
AATGCTCTTGGAAAGCAGTCCAAAATCTACTCAGTGTGTTAGCTGTGATTTGAATCAAGAAAGATGCCAGTATTATTCTGCTTCCTTCAGCAAAGATGCACAATATTATCAGCTAAATTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]