GgaINT0048346 @ galGal4
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
dipeptidyl peptidase 4 [Source:RefSeq peptide;Acc:NP_001026426]
Coordinates
chr7:20657812-20658450:+
Coord C1 exon
chr7:20657812-20657865
Coord A exon
chr7:20657866-20658325
Coord C2 exon
chr7:20658326-20658450
Length
460 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
GAAGCTCATCTACTTTGCAGAAT
3' ss Score
5.05
Exon sequences
Seq C1 exon
GTACTATATTAGTAATCAAAATGGTGAGATGCCAGGTGGAAGAAATCTTTACAA
Seq A exon
GTAAGAAATTTGTTGTGCACTATGAGTAAAATACCTGCTAATGAAAATGTAATACTTTCTCTTAAACTTTCTACGTTGAAGATTAGGCTGTTCATATTCTGAAGTACCGCCAGTAATAGGATATTTAAATAAAATCGATATAGTAATATAAACTTAAAAAAAAAAACAACAACACTATAGTATTTTTCTGTAATGTTAGTTATTAAAAAACAAACAAGCAAGTTGCCCCTGAAGAAAATCTCACATGCTTTTACTTTTGCTGTGATGATAATTCCAGTATTAACTGAAATTAAAAAAATTAAATCTGCTTGCTTTGCTATTTAAGTCAATAAGAGCTTTACTTTTGAATTTTATCAAATTTCATTTGGTCATCTCATTCAAAAAATATACTTCTCCACATTGTTTTAAAAAAAATAATAATAATCTTTCATCTCTGAGATGAAGCTCATCTACTTTGCAG
Seq C2 exon
AATGCTCTTGGAAAGCAGTCCAAAATCTACTCAGTGTGTTAGCTGTGATTTGAATCAAGAAAGATGCCAGTATTATTCTGCTTCCTTCAGCAAAGATGCACAATATTATCAGCTAAATTGTCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.9=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(11.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]