RnoINT0050825 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48318868-48319442:-
Coord C1 exon
chr3:48319389-48319442
Coord A exon
chr3:48318990-48319388
Coord C2 exon
chr3:48318868-48318989
Length
399 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGA
5' ss Score
5.17
3' ss Seq
CACCACTGTTGGCTTTACAGAAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
GTACTACATTAGTAATGAATATAAAGAAATGCCAGGAGGAAGAAATCTTTATAA
Seq A exon
GTAAGAGTGCTGTGGGGTCATGACATCAGGGGTTTTCAGTGACAGATTATTCCTTGTCCTTTTCTGTCTTTCTGTCTGTCTTTCTTTCTGTCTGTCTGTGTGTGTGTTTGTCTCACCCTAATTATTATTACTCTGGAATTGTTATAAGTACTTATGTTGCTTCACTTATCATTCATATATAACCAAAACAATGATTCTACTAGGTGTTTACTGTCATTTCCTGATTATGGGAGACTGGGGTCATCATAAACTAATATATGCATTTTATGGTGAAGAGAAAGTCCCTGGAGGGTTGCTACGGTGGTCTGAGTCTTCTGAGATCGGAGCTTGGCATTAGTCAGTTTCTTCCTCTCATTTATGTTTTGATGAAGCAATTAATCACCACTGTTGGCTTTACAG
Seq C2 exon
AATTCAGCTTACTGACCACACAAATAAGAAGTGCCTTAGTTGTGACCTGAATCCAGAAAGATGCCAGTATTACTCGGTGTCACTTAGTAAAGAGGCAAAGTACTATCAGCTGGGATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(4.8=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]