GgaINT0048348 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22736971-22737619:+
Coord C1 exon
chr7:22736971-22737018
Coord A exon
chr7:22737019-22737520
Coord C2 exon
chr7:22737521-22737619
Length
502 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGA
5' ss Score
9.11
3' ss Seq
ACTTATTAACTGTTATTTAGTCC
3' ss Score
3.88
Exon sequences
Seq C1 exon
GTCCTGGCCTGCCTATGTCTACTCTGCACAGAAGTAGTGATGATCAAG
Seq A exon
GTATGAAATTGTCTTAAAATATAATTTCTGTTAAACCAGGAACATGCACTGTAAATTTATTTTAATTCTCATTGCCTAGTATAATAATTAAAAATTCAGTTTTATCTGAAATTAAATTTATCCTTTATTTCTCCACTATAGTTAACCACAAGGATAAAGTAAGGAGTTCAGCTTGCAGCTCTTAATACATTATTTAATATTATCTTACGCTGTGCTAGAAAATAGTAAGTAATCTATGTCCTATTTACTGGACAATTGCTTGTGTTTTGTGAAAATGCAGTTAGATGGAAAATGTGGAAACTGGCATTCTGGTTTCTAAATTACTGTGGAAGAACTATGCCAGAAGTATTGACTATGAGAGGAAAAACAAAAACTGCAATAAACTGAGACTACCAAGTAGGTGGCCAACTTCTCAAACTGACTTTTCAAAGTGATTCAAATTCAGAGAGTAATGGATTTGAAAATAGCATTTGAGCTTTGACACTTATTAACTGTTATTTAG
Seq C2 exon
TCCTCAGGTACTTGGAAAATAATACTGAACTGGAAAATTCACTGAAAGATATTCAAATGCCCTCAAAAAAACTTGGCTCCATTACTGTAGGAGGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.157 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.4=29.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]