MmuINT0052919 @ mm9
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62194673-62195064:-
Coord C1 exon
chr2:62195017-62195064
Coord A exon
chr2:62194772-62195016
Coord C2 exon
chr2:62194673-62194771
Length
245 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTTTCCTCTATCTGTTTAGAGC
3' ss Score
8.69
Exon sequences
Seq C1 exon
GCCCCGGTCTGCCCCTCTACACTCTACATCGTAGCACGGATCATAAAG
Seq A exon
GTATTTTGTCATACTTCCCCCTCTCCCCCTCCACCGGCTTGTAGGAAAGCGCGCACGTGGATAGGGCCAGCATGGGATTTTTCCCTTGGCATTAGAGACTTACCCAGGAGTTAAGACATAAGCCTTCCTCCTACCGGAAGTGTGCACGGCCCAGCTGCCGCAGTGCACGCCTGCTCACTGTTGTCGCATGTGACCTAGCCTCTTTGTCCTGTTACGAGTTATGGCTGTTTCCTCTATCTGTTTAG
Seq C2 exon
AGCTGCGAGTCCTGGAAGACAATTCTGCTTTGGATAGAATGCTGCAGGATGTCCAGATGCCTTCAAAAAAATTGGACTTCATTGTTTTGAATGAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-Dpp4:NM_010074:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.3=29.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGTCTGCCCCTCTACAC
R:
TTCATTCAAAACAATGAAGTCCAATT
Band lengths:
140-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: