RnoINT0050827 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48317006-48317384:-
Coord C1 exon
chr3:48317337-48317384
Coord A exon
chr3:48317105-48317336
Coord C2 exon
chr3:48317006-48317104
Length
232 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTT
5' ss Score
7.64
3' ss Seq
TGTCTCTTGTATTTGTTTAGAGC
3' ss Score
7.78
Exon sequences
Seq C1 exon
GCCCTGGTCTGCCCCTCTACACTCTGCATCGCAGCACTGATCAAAAAG
Seq A exon
GTATTTTGTCATCCTTCCCCCTCCACCAGCTTGTAGGAAAGTGTGCACATGAATAGGACGGGCATGGGATTTCCCCTCGGCATTAGTGTCTTACCCAGGAGTGGGACACTAGTCTCCCTACCTGAAGTGTGCACAGCCCAGCTGCCGTCGTTCACGCTTGCTCGCAGTTGGATCATGTGACCTAACCTCTTTGTACTGTTAGGAATCATGGATGTCTCTTGTATTTGTTTAG
Seq C2 exon
AGCTGAGAGTCCTGGAGGACAATTCTGCTTTGGATAAAATGCTGCAAGATGTCCAAATGCCTTCAAAAAAATTGGACTTCATTGTTCTGAATGAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(1.3=29.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTGCCCCTCTACACTC
R:
TTCATTCAGAACAATGAAGTCCAA
Band lengths:
140-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]