GgaINT0048349 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22737521-22739746:+
Coord C1 exon
chr7:22737521-22737619
Coord A exon
chr7:22737620-22739676
Coord C2 exon
chr7:22739677-22739746
Length
2057 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTTGCTCTCTTCCCTTCTAGACC
3' ss Score
10.85
Exon sequences
Seq C1 exon
TCCTCAGGTACTTGGAAAATAATACTGAACTGGAAAATTCACTGAAAGATATTCAAATGCCCTCAAAAAAACTTGGCTCCATTACTGTAGGAGGATACA
Seq A exon
GTAAGTTCAACAACGTTTTACTTTTCTTCCCCACATTGCCAAGTCCTTCAAGGTCTTCTGTTAAAAGAGTGTGACAGAAAAGATGAGTGTAGAGGATATGTTTGCAGTTATTTGGTGCTTAGAAACAAGATGAATATATTACGTGTAGGTATATGGGTGTGTGTGTGTATATATATATATATATTTGCTAAAATATATACACAATATATACACAAGCATTCTGACCTAAAATACTCTTCCTCCATAGTGTGATGTCTTGAAGTTCTCATAATGATGTCTTGAAGTTCTCATAATGATGTGACTTTACTCCATTTTTCCTTGATATTTACCTGAAAAATAGTAGAAGGCTCTACTGCCAAATTGGAGGGAAAAAAAAGAGTAAAAAAGGGAGGTGGAGCAGGCACAACATTCATAAGCATGTTACCTTAAATTCTAAATTCAAGCGGGTCTTAATTTACAGACACAAATTTCTTTGGTTGGAGAGAGCAGGTGGGAGGTGCCATACAATTATTATTGAAAAATAATTGCCTAAGTGGGAAAGCTTGCAAATCGAAAAACACTTCAAGATTACCTTTGACCTTCTGAAGGGGATATTTCAGTTGAATAGTCACATTGTTAAAAGCATGTTCACGCTCAAGATTACATAAACCAAGTAACAAAATGTTAGGAAACGAACTGGTAATGCTTTGCTCATTGTGCTTACTTGAATTTGCACATCCAGGTACAGACAATTCCTTGGAATGTTCCTAGACTGAGGAACATCAGATAGGTATCAGGCCTAACACTGCCATTCTATCTGAACTGTTCTTGCTCAAGCCTTTGCTACTAGCTTTTCTATTCATTACAGGCTTCCTCTTGATAAAATGAATATTCTTAAATTTTATTTTACATGCTGTCCCTGTAACCTATTCTTTTAGATGTCTCCCTCCTTCCACTGTTACCTTGTTTAATAACAGTCTTTATCTTTGTGTTTTCTCTTTTATTTTAGTCACATTTTTACTAGGGCTAAAGAAATCTTCCAGGAAAGATGGAGGTTTAAAGATGTTCTTCATGCTATCAGTTGTGTATTCATCTTTTTATTCTTCTTTGTTCTTACTACTTCATCTCATCAGGGTAAAAACTTCTGGGTAAGGGGATTCTATTTTTAATGTCACAAATAGGATAAATAAATTCATTTCTGTAGTCCTAACTCAAGTTCCAAGTCTGCTTGCAAATCAGTGTATGTACTTATCAAAGAGATTGACTCCTGTGACTGCAAGAGTACATAGATGATACAAAATAAAGAAAAAAATATATTTTAAAATGTTCAATTATGGCTTAGAATTTTTCAGTGTTCTAATGTATTGCATTTTCCTGTCTGGACAGATTGCTGCAGTACTGTAATACACTCTACCCATTATTGGAGTGCAGTCCATTGTAATTGTGTCAACGGTTTAAGGGCTGGTCCGGCCCGGTTCCGCTTCCTTTACAGTATCCATTCTTTTAAAATTAATGAGTGAATGGCAAAGCCAGTTGGTTTGCAAAACTTACATTGTGTGCATTTCAAATATTCTCCTAACTCTCTGACAACTACTGTAGAAAGAGCAGTATGAATGGAACCAGAACAGTGTTGCCTGAGAAAATAATAGATACTTGGGTTTTTTTCTGTGATGCTTTACAAACCACTCTGTAAAGTGGTAGGTTTATAGTAGGTTGATAGTATTCAGAATTTCTTTTCTAGTGCTGAGAGAGAATCTAGAGTATAGAAATATTTTTTTGAATTTGTTGTAGAATTCCCCCTGCAGATACTTACCTAGTTTTACAGGTAAGTTTTATAATGTTAAAGGAGAGCATGTTAATGCCTCGGATTGTATTATTTCAGGCATTTTAGTTTCAAACTTTCTTCTAACTTCATTCTATATATTTCTTTGCTTAGCTGGAAACCTTTACCTATGTTAGTACAGTTCAGATGAAGCTACTTTTTAAGGGAGTGATTTGAATGTGCCCTTATATGAATTGCAGTGTATGTCAAGTTATTTTACTGGAGCACTGACCAAAGTTGCTCTCTTCCCTTCTAG
Seq C2 exon
ACCTGTGGTATCAAATGATATTGCCTCCCCATTTGGATTCATCAAAGAAGTACCCTCTGCTCCTTGAAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]