MmuINT0052920 @ mm9
Intron Retention
Gene
ENSMUSG00000035000 | Dpp4
Description
dipeptidylpeptidase 4 [Source:MGI Symbol;Acc:MGI:94919]
Coordinates
chr2:62192596-62194771:-
Coord C1 exon
chr2:62194673-62194771
Coord A exon
chr2:62192666-62194672
Coord C2 exon
chr2:62192596-62192665
Length
2007 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TAATCTTTCTGCTTGTTTAGGAT
3' ss Score
8.85
Exon sequences
Seq C1 exon
AGCTGCGAGTCCTGGAAGACAATTCTGCTTTGGATAGAATGCTGCAGGATGTCCAGATGCCTTCAAAAAAATTGGACTTCATTGTTTTGAATGAAACAA
Seq A exon
GTAAGTTACATGTAGAGAAGGTTGTAATTTCCTAGTGAGCTCAGGTGGGGCATGTGGTAAGCATGGATCGCTCTCAGGCACCACTAAGGACAGTAGGTTTGTCTGAGTTAGAAACGCTTCTTTCTCTTCAGTTTCTGTTTCCACTCAGGAAAAATGACTTATGGGAAAGGAAGATATACCTCATGGTTGATGAGTTTTGGTTTTTAATTTAGCACCATGGGAAATATGGAGCTGAAGAGATGGCTCAGCCACTGGGAGCTGTTTACAGCTCCTGCAGGGGCCACGTTCCTTTCCCAGTGCCCATGCCCGGAGGGTTCCCAAGCTGTGTGACTTCAGAATTCCAGCACCCTCTTCCGGATTCCCAGGGCATCTGCTACTACTTGCACAAACCCACACAGAGAGATACATACACACATAACCTAAACTAATAAAAATAAAATACTTTTTTTTAAAGGAAATGAATAAAGTATTCAACTCCCGTCATTGGAAAGGGTAGGACAGACCCACTTGGGCAGAATAACTTAGCACCCTGCTCAAAGGGAATGTGCAGTGTGTGTCACCAGGGTCCTTGCTAACAAACCCCTTCCGACCCAGCAGGGGTGCCACTGCTCCTTGTCCCTGAGACATCTTGAATGTAAAGAGCTCATTTTGACAGTCTGCTGCGGAGTTCTGCAGTGCATATGGAGACGCCATTCTATTTCAGCGGGCACACAGTGGGAGTCCTTAGGTTTTAGGGCTGGGGAGGGCACACAGTTAAAAAGAAATTTTCATAGAAAGTAGGAGGGGACCAACATGGGGGTGGGGGGAAGAGCACTCATTAGGCTTTAGTCGTTCTCACTACATCACTGCAGGAAAGGGGGTTGAGACGTGGCCTGAGGAAGTGAGACTTTGGGGCCTGAAAGACCCCGTCCTCACAGAAAAACTGCACATTTATAAAAAGATAGAGTTAAAACCCTTCTAATCAACTAGTGCTGGCCAGACAAGATGTTGAATCATGACTGGTGCATGTATTAAAAATATCAGTCAGTCTGGCTAATAGTTTGATATTTGATTAAAATTATAATAAAAAATATTTTTCTTACCTACACATTGAATAAAAAGCACTAAACAATTAGGAAACACAAATTGAAGATAAGCCCATCTATATAAATGTTTGACTACTGAGTCTATCTTTTTCTCTTTAACCAAAATCATTATGAAAATAAGTCAAGAAGCAAAAGGGAGAGTACACATGAGAGCCTCCTCCAGAGATCAGGAGTTTTGTTTGCTTGTTTGTTTGGTTTGGTTTTCTGAGCCTATAGTTTACATCTTCCCGAGTACGTGGAACTCTCATTTAGATTTATTAGACTTATTTATTCTGAGATCAAAGGAGACTGACTCATTATCTTGAGATAATTTTTTTTATTAAACTGATGTTAAATCAAGCATAAGAATTTAAATGGACCCAAGAAAGAGCCCAAAGAATGTGAAAGCAGTTTATTTCCCAGGAGCCGATTTCATTCTGTGAAAAACTGAACTGAGAACAAGACTCTGCTCTGCGGTCTGGGGTGGCAATAGGAATTAGAAAATCACTATTAAATCCAGATTTTAAAAGAGAGTTATGGCCGACTGCAAATTCTAAACAGCCTCAAGGAAATTCGAGAAGAGGAAAAACATTTGGGAGGAAAATTTAGAACATAAACAAGCTAGATAAGAAGACTGGGTGCCAAAGAACAGAAGCATAAAAACAAAACATTAGGAATCCTAAAATGCACTTGTAGTTTAGAAGCCATTGATGGATTCACGGCTGTATTAGAAATGGTTTAATTGTTTTCCCACCATAGTAACTAGCCCTTATGAACAACGCAGCTGGCTTTTATATCTTTAATATGTGATCCTAAGCTGATCTTTCTTGTTTTCTACCTAACTTAACAAATTGGTGAGCTCAGAGAAACTACTGAGAAATAAGGAGTAGAATCCCACTAATAACTATTTTGATCTCACTAATTAATCTTTCTGCTTGTTTAG
Seq C2 exon
GATTTTGGTATCAAATGATCTTGCCCCCTCATTTTGATAAATCCAAGAAATATCCTCTACTATTAGATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035000-Dpp4:NM_010074:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: