GgaINT0048536 @ galGal3
Intron Retention
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38175426-38176329:-
Coord C1 exon
chr7:38176236-38176329
Coord A exon
chr7:38175460-38176235
Coord C2 exon
chr7:38175426-38175459
Length
776 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TGCTTTTTGTTTTTTTAAAGGTC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTGGTGAATTGAGATATAAATGCACATTGAGTGGACATTCTGCCCCAGTTCTGACTTGTGCATTTTCTTATGATGGGCAGATGTTGGTTTCAGG
Seq A exon
GTAAGCAGTATCTTGTTGAAATTTCAGATGGCAGTCCAGTCCACGCTTAAGAATTGTAAAACAGAACGTTTAAATGAGTTGCAGAGTTCAAAATATATTTCCAGTAATTGCAGAATAGTTTTCTGCCCTCCAGAGACAATGAATTGTCTTCCCAGTTTGTTTGTGTCTGGGGGGGATTGAGTTTGAAATGTAGGATTTTGCAGGCTCTGTTCTCTGTGCATTGCAATGAGATTCATTGTTTCTGTTTTTTGGACATTTATATGGCCGTCATTTAATTTTTATTGAATTGCAGTGCTTCCTTTAGTTTGCTTTGCAAATGAAAAGATTTTGGAAATAGAAGAGCTGAGAGTAGTTAATGGATAGCCAGATTGAGTGCATGGTGCACAGAAATATCTACATTACAGATACTTCTTGCAAAGAACTGTTTGTACCTTGTGGGAAGCCATGGAACTGGGAGCCAGTTTGCATGAAACCTCCCTCTGCATCAGAAATTATGGAAGTGCAGAATTTGGGATTTTATGCATTGTTTTAAAAATGCTGTAGATACAGCTAATGAGTGTCATTGTCTTAAGCTGGAAATGCATGGAGCTTTGCTTTCCATGAAGCTCTGTTATGGTGAGTTCTCTTGAGAGTTCTATTTGTTCATTTTACTTGTGGGAAAGTTGGGATTTTTGTGTTGTGTTTTTTTCCCCCTCCTTTAATTAGAAATAGTTTGATTTCTTATTCCTCTATGTATAATTTTAATGTTGATGTGTTTGCTTTTTGTTTTTTTAAAG
Seq C2 exon
GTCTGTGGACAAGTGTGTCATAATATATGAGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574:ENSGALT00000020533:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=PU(71.1=84.4)
A:
NA
C2:
PF0040027=WD40=PD(26.3=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]