GgaINT0048843 @ galGal4
Intron Retention
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31386124-31391867:-
Coord C1 exon
chr7:31391742-31391867
Coord A exon
chr7:31386289-31391741
Coord C2 exon
chr7:31386124-31386288
Length
5453 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
TCTCTGTGCTTTTGCTGCAGATG
3' ss Score
11.3
Exon sequences
Seq C1 exon
TGCCTAATCCATGCTTGGACCTGACATGTGAATTCATTTGTTTACTCAACCCTTCTGGTGCATCATGTGCTTGTCCAGAAGGAAAATCATTAGTTAATGGGACATGCGTAGATCAAAGTCTCTTAG
Seq A exon
GTAGGTACTGAAAATTGTGTTTGTATGTGCATGACTTTGACACTAACAAAAAACTATGAAGTAGATGTTTCAGGCTGATGTTCCACTTGGGCTTCAAGGAATGGGCAGATTCCTTGAATAGATCTCAAGCACCATGTAGTTTTTGGCAGGTTGGCAACCTATTTGGTGTTAAGAGTCCACTAATAGCCTCCAAACAAGAGACACTATGTGAATTATCAATGAATGTCTTTTCTTGTTCGAAATCAAGTTCTAAGAAAGGTTTTCTTTCTTTGAGAATTTACACAGTAAGAAATAAAAAAATGGGAGCGATAGTCTTCCCTTACTTTTCTGATTAAAAACTAGAAAATGTATATGAAACATCCCAAACTACATGCATTCTATTTGTTTAAATGTTCCATTATGTCTTCAAATGTCTTCATTGTCTCAACATTTTTGGCAAAGTGAAGGATGTCAGAAATGCAAAACAGCAATTCCTGCCTCACATGACTATAAAATCCTTATATTTTTGGAGATTACATTAGGAATGACTCTATAGTGATATTCTTGTTGATCTGCAATAAAATCTCGCTCAAAGTCAGTTTAAAGATTCCTGTAGATTTCAGCGGTCATCTGGTTAGTCCTTGAAATCATGAAATCCACATTTTAATCTGAGATATGAGTATGTATCTGTGAAATGCTTTAACTGATGAACTGTTTGTTTTTATGGTTGGTTTGATCTCAATGTTGTAAATATAGTAAGTGCGTCACAATCATTTATGTACTCTGATTTATGTGTTCAGAAATATTCTACTTTCTCACAATTTCTTATTGTGAGGTCTGCCTTAAGTTGGTCACTGGGAGGCAGTCTCACTTGCAGAATTAGAATAGTTCACTTGGAAAGGAGTTACCATCAAGACCAACTGCCTAACAACTTCAGGGTTCTTGTTCTTTTTCTTGTGACTGTATCCCCCAAGTTGACTCAGTTTCTGGCTCCTTGGATTGTTGATTTTATTTAACAAAAGGAAATTGAGGTAAGTCTTGAAATTCTGCATAATACAATTGTCATTCTGTAAATAACTTGATCCACTGAATTGATTTTTCTTCATAAGTACTATGTGAGGAATAATAATTTTTGAATCCTCAGTGACTTTCTGTAAGACTAAATCCCGATTGCTCTAGACAGCTGTTTTACCAGCATTTCTTACAACTAATGAAAAACAGAGTTTTGGGGTTTTGTTTGGTTCTCTCAAGTTAGAGATATTACAACATATGTGTGTTGTATCATTCAGAATGGTTTTATAATAAAATGAAAGCAATTTCCTGCGTATTCTTAGATAAACTTTCATCTTTTTTTCTCCCTGCATAACGTGGCGTTTTTTTCTGTGATTTCATGGCTGCAGTAGGCCTAACTTCTTCAACTTAGAAGCAGTTTTCAAATGGGTAGAGTTCATATTGCTAAGTGAGACCACTTGATTTGCATCCACTAGGTTCATTGTATCTAATGCCTGTAGAGTAGTGAAGCTAATAGAGTAGGGACTGAAAATACTGAGATTTGCACTGGAGGAAGTCAGTGTGTATCACAGCTGAATGAACAAGACTAATGGAATGCTTCCAACAGTTCAGTGTTTTGGGGGTGGATACCTATCACTTTCATTTTTAGAAGGAAATGTTTGTGATTTCTTGGCTGGAAGAAAAGCCTGAGAATAAAGACTCAAAGACTCAGATCTGGCACTGCTTCTGAATAGAGATGAAATATTTCATTTATTGTGGTGTTTTCTTCAGCACATTTCTGTGGGGATTTGCCCTCTGCATGCACAGACTGAAGGAAACTAGGTGCTCTGGGTGGGGATGTAGAGGTTAATCCCTGTGTACCTTTGATTTTGCCCTCAAATTCTACCTCAGAGAGCTGCACTAGCAAAAGCTATTGGCGCTTCGATCTCTACTATCTTCTTGATTTCTGTCTTGCTTTCAGGTTTGTTTGTTGTTTTTTTTTCTTCTAGATATCAAATAGAACAGTGTTCCAACACGGAAAGCTGCTTTTGGTTTGAAGAAAGAAAAGAAAAAAAATGATTACAGCAGTATCTTCTATATTTATATATAGGAAGTTGTTATATGGAGACTGATATATCCTAGAACTGAAGAAAATGAGTTAAATTACTGCAGGTGTTGGTTTCTTCTCACCATGCATCCTTTCCTTAGCCATTTTCTTCCATTGAGGATTGTAAAGCAAATGGATATTTTAAAGAAAAAAATGGAAGGGAAATCAAAGTCTTTCTTATAGCACTCAGACAAAATTTGGAGATTTCAGCTTGTTCTGAAAACTTTGGCAGATGGAAAACTGGCAGAGCAGGAGCCCTTCGTCAGAGGGACAGTAAAATGTACATAACATTTCCATATCATTAGAATTCCATACTCATTCCTTAATAGATGTATTCAGTTCAATTAAGTATGACCTACATAATTTTCTTTAGGATGGCGCAGAAAGGTTCTCGCCTATGAAATAGTATTTTCCACTGTGGAAAGGGAAACTGTTCATGTTCCAATGAATGTTGTTCATTAATTGTTTTTCAGCCCCTCTGCTGCCATCTGTTGCATAGCAATGAATTTAATGGATAATTAGTGGGAAGGTTCAGCCTCTATTGCCATACCACCAATGTCCACCCCTGATGATGTGAACCAACATTATAAAATAAAAGGCATTACTTTTGGAACAGACCTCATAACAAGTGAAATTATTGACACCTAACATTTCTGAAAAGAATGTCTGCAAGGTCTTTGAGTCCAAGTTCTAACTAGCTATGACTAGTACGTAATTGACTCCCTTTTTATTTTTTATTTTTTATTTATTTTTTAACTCGATTTTATTTCTCTTTGTTCCAACAGTGAATACTTACTAGAGAAGTTCCCAACTCATTATTTTTTTTTTTCTCCGAAGCCTTTATTCACTAATTCAGATTAGCCTTTTGTAACAATTCTTTGGTGTGTCTCTCCTGTATTTTCTCTTTCTCCTGTCTTCTCCTATGGGCACATTTTGTTCCTGTCTCCCATACAAAGGCAACTGATCCCCTTTTGGACTCCACTGATGTGAATTATCTAGAGTAATTTGATTCTTTTAGCTACTTTCAGACAAAGAAAAAAAGCAGCATGAAAACTGCTGTACTGTTTAAGTCTAACATAGTATTTGTAAATTGACTTATCTATTACATCTTTCAGTCCTAGTAACTTTTATTAGTTTTGTATGAGATTTTTTATTTAAATTCTTGGATGGAGAACAAAATCAGTAGCCAATTTTACTAATTTTGTTATGCTGGAAAATATCACAATCCTTACAGGCTTTTCAGATTGTTAAAGATATAACATGTGTTGCATTTAAACTGTGTAATATGTATGTGTCCTAGTCATTTTAAAGGCAATTTGTTTAGGTAAGCTTTACTGTGGGCAATTTTTGGTTCATTATTTTTTTGTCCAGAATTGTTCTAGAAAAGAAATAAAATGGGTATTTTTAATATACTATCAGAAAGGTTCCTAAAAATGAGCAGTTGTCTGTACTTCAGTGCTATTCAGTTTTTGTACAGTTCTGCTCTATAAACTCATGACTAATGATAAGTAAAACAGATAAGATAAGATGAGCAAAACAAAAATAGACCTTCTCACCAATAAGATATGCCACATTATCCATTTAAACAACTTCTGTAATGAGTAACTGAAGAATGGCTCATGGAACATCAAGGGGTTTAATGAACCACCTAAATAAATAAATACTGAGGCATCTTCAAAGTTCCAAGCACAAAGTAGCTTTGTTACATTAGATGTAGATCCACGGTAGATACCTAAAAATGAAGACTATATGGTATTTCATACTGGTATCATAAGACCTGAATGAGTGCCACTCATTCCTCCAAAAGAACTTTCAGATGCATTGTCTAGTTTTAATTTTAGGCACCTGCATCTCTCTCAAATGAAAAATGGATGTTAAAGGACAGATGGATACCTTTGACTGCTTTGTCTTTTGTATGACTAAGAGTAATTCAGCAAAACATCTGTATCAGGGGATACATTACTGAAGAGTTCTCAGTGTTCCTGACTTTGTATTAGTTTGGCAGCAGTCTGTATTTATAAGCTTTGTTTTGTTACGTGTAAGATGAGAAGTCATGCTAAATGTGTATTTTGAGCTGCAAAGGTCTGTTGCTCAGGATTACAATTATTTGGATGTGTGAGCATGGTGTACATGCTGGTCTGTAATTAATTTATTGTTGGTGTTATCGAACAATTTTATTTCTTGTTCACTCAAATGAACAGAGATTTATTTCTCGGTGTTTCCAGGACAGGCACAACTCTAATTGCAAAACAGCTTTATAGAAAGATTGAATCTCTCTTAATCGGGATATATGTTACCATGCACCCCACAGCTAAGGAGGTGGTACTGCTGCCATGAGCACTTAGCGAACACAGTGCAGTAAACAATGTCTTGTCTTAGACAGAAGGTAAAACTGGGGGTTGTTTAGTCTAGAGAAGAGGAGAATCAGGCAGACCTTATTGCTATCTACTCCTCTCTGAAAGGAGGTTCTGGCGAGGTTGGGGTCGGCCTCTTCTCCCAGGTAACAGAGAGAGGAAAAGAAGTAACGACCTGAAATTGCACCAATGGAGGTTCAGGTTGGATTTTAGGAAAGATTTTTTTCTCAGAAAGGATTGGTAATGCATTGGAATAGGGAAGTAGAGGAGTAACTGTCCATGGAGGTGTTAAAGGAAAACGGTAGTTGTGACACTGAGAGATGTGATGGGGCATGGTGGGATTGGGCTGATGGTTGGACTTGGTGATCTTAGTGGTCTTTTCCAACATTTATGATTCTGTAAAAGAAAAGAATAAACCAGAAGGTATGGTTTAGAATTACCATGTTAGTATGCAAACATGATTTTTTGAGGATGATTTAAAAGCTGAGCAGCTTCCTTTTAAATATTTTCAATAATTTTATTAAGAAGTATGTTAATAGAGTGGAAATGAGAGGGAAATAAATCAACGGCGAAAAGGTAAATCCCTTCAGGCTGAGGTCACCAGAAGAATACAGGGAAGTTTTCTGAGATCCCCTGGATGACATCAGCATTCTTTTTTTCCATTTCTTAAACTAAAAATGATAGTTTCAAACAGGAATTCACACTGCCATTACTAACTGACATCCTCTGAGGGGGTCAGCTGTCCTGTCACTTTGTTTGGATGAAACAGGAGCCAAGACGACATATCCAGTACCCTAGTATGATACAAGCCTCCATACCTGGATACAGATCCCATTGCCTCTGCAGCTCTTGATGGCCTTTCCAGAGTTGGCTTATGTTTTGTTAAATGTGTTTGTTATTTTTTTCTAGCACCGTGTGGTAGTTTACCATTTAGTTTTTGAAAGGCATATGTATTTTTGCACATAAGTAGGGATCAGTAGCTTTGTATAAAGTACAAATTGTTCTCTGTGCTTTTGCTGCAG
Seq C2 exon
ATGATACATGCAAACTAACCTGTGAAAATGGAGGAAAGTGCATTATAAATGAGAAGGGAGATCCACGATGTCACTGCTGGCCAAGTTACTCAGGTGAAAGGTGTGAAACCAACCACTGCTACAACTACTGCCAGAATGGAGGAACCTGTGGAGCCTCTCTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407:ENSGALT00000020272:83
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]