GgaINT0049787 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36844681-36845063:-
Coord C1 exon
chr7:36844959-36845063
Coord A exon
chr7:36844780-36844958
Coord C2 exon
chr7:36844681-36844779
Length
179 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCTTCCTAATTGCCTTACAGAAT
3' ss Score
8.76
Exon sequences
Seq C1 exon
TTGATCTACAAATCAGATTTCTTTAAGTTGCAAGGACACTTGATTTCCTTGCCGTTTACTCCTCAGGTGTTGCACTGCCGCTATGTTGGGGACATCACAAGTGAT
Seq A exon
GTAAGTATTTTCTGTTAAGATACCTGGTATTTGAATGCAGAACTTTTATACTGAAAGTGGAATTCAGCTTTTACTCTACTCCGTAATGGGTAAATGCTTTGTAATTGTGTTTAAGGACTGATGAGTGAACTTGTCTGCAAAGTTAATATTCTGTTTTTCTCTTCCTAATTGCCTTACAG
Seq C2 exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:99
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATTTCTTTAAGTTGCAAGGACA
R:
GCTTACGCAGCTGACGAGC
Band lengths:
187-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]