GgaINT0049787 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34717705-34718087:-
Coord C1 exon
chr7:34717983-34718087
Coord A exon
chr7:34717804-34717982
Coord C2 exon
chr7:34717705-34717803
Length
179 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCTTCCTAATTGCCTTACAGAAT
3' ss Score
8.76
Exon sequences
Seq C1 exon
TTGATCTACAAATCAGATTTCTTTAAGTTGCAAGGACACTTGATTTCCTTGCCGTTTACTCCTCAGGTGTTGCACTGCCGCTATGTTGGGGACATCACAAGTGAT
Seq A exon
GTAAGTATTTTCTGTTAAGATACCTGGTATTTGAATGCAGAACTTTTATACTGAAAGTGGAATTCAGCTTTTACTCTACTCCGTAATGGGTAAATGCTTTGTAATTGTGTTTAAGGACTGATGAGTGAACTTGTCTGCAAAGTTAATATTCTGTTTTTCTCTTCCTAATTGCCTTACAG
Seq C2 exon
AATAAATACAAAGAGGATCTGAAGTGGTTGCAAGGCTTGGGCTGCTTCCTTTATGATACTCCTGATATGGTCCGTGCTCGTCAGCTGCGTAAGCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=33.3),PF0088013=Nebulin=PU(48.3=42.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGATTTCTTTAAGTTGCAAGGACA
R:
GCTTACGCAGCTGACGAGC
Band lengths:
187-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]