GgaINT0049812 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36823730-36824409:-
Coord C1 exon
chr7:36824299-36824409
Coord A exon
chr7:36823841-36824298
Coord C2 exon
chr7:36823730-36823840
Length
458 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
3' ss Seq
TGCTTTTCTTTCTTTCACAGAAA
3' ss Score
11.52
Exon sequences
Seq C1 exon
AAAGAATATAAGAGGGACTTTGAAGAGTCCATTAAGGGCAGAAACCTTACTGGCTTGGAGATAACACCATCCTTATTACATGTCAAATATGCAACCAAAATAGCAAGCGAG
Seq A exon
GTAGCAGTTATTCTGTGTTTATTTCCTCTTACAAGTTAAATAATTCCACTAAGTATTCTCAGCAGTATTTCTTCTTCACCACTTTCTTTTTTCCTAACCATTCACTTTAAGCATGTTTTCATATATTTTGTGTTGTGACCTAATTTGTCATGGACACTTAACTGTTCTTTGTTAACTGTCTTCGTGTTTACTGTGTCCCTTTCTGACATACTTCAACATAACTGTCCTGTAGTGGAGTGTGTATGTGTGTGCCCTTGCAATTTATCTTGAACAATAATGACTACACTCTGTTCCATTGCAGTGGCTCTTTTATAACCCTAAAAAATATTCTTTGCTGTTTTAAAAAGTCCTCCTTTAACTTGGAGCTTTTGGATTATTTTTTTTCTCATTTTTACAATACAGCTGGAGTATGTAGAACTCTTCTGTAGTCTGGCTTTGTGCTTTTCTTTCTTTCACAG
Seq C2 exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:124
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.135 A=NA C2=0.297
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAATATAAGAGGGACTTTGAAGAGT
R:
CAGGATCTGAGTTGCATTCTTTGC
Band lengths:
214-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]