GgaINT0049813 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6U7Z0]
Coordinates
chr7:34695799-34696864:-
Coord C1 exon
chr7:34696754-34696864
Coord A exon
chr7:34695913-34696753
Coord C2 exon
chr7:34695799-34695912
Length
841 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
TTTATTGTCTTCATCTGCAGAAA
3' ss Score
10.7
Exon sequences
Seq C1 exon
AAAGAATACAGGAAGGATCTGGAGGAGGGTGTCAAAGGTAAAGGACTATCTGTTTTGGAGGAGACTCCAGACATGTTAAGAGCAAAGAATGCAACTCAGATCCTGAATGAG
Seq A exon
GTATGGGACACCAGTATGTAGTCACTATCACTACCTATAAACTCCTGAGTGGACAGAAAAGAAATAGAATGTGTATGATGACTAAGGTTACTGAAGCAGAGAGCTCCTTTTAGATGATGAATGCTTGCTGAGTGCCTCAAAAACAGTAGCAAGGCTGGTGGGCAGTTCCCCCTGCCCAGGCCAAACTCAGAGCAGCCAGCTGTTGACTGCTACAGGACTGATGGCCAAGGTGGACTCTTCCCCAGCCCACAGGAGTGAGGTGGCCAAAGGAGTGAGGAGTAGAGAATGAAATGCAAACCTATCCTGATTTATTTATAAGGTGGACGGTTACAATAAACATTGAATAGTGACTATTTTCATAGGATAAACTTAGGTCATACTTTAAGGGCTTTTAATATCATCAGACTGAAGCTGAAAAAAGTAACATTTTAGTGTTAATTTGGTATGAGTCATTAACATATACCCTTATGATGAGCGTGCTGATTGACAACAGCATTTTGTACTTACAGCAAGCATTTTTGAGTTATTCAAAGGTATTTTATAACCACACAGTGTTGCAGACATACTCAGCAAAATTTGGCAGAGTTGGCATAAAGAGCTAAGAATTATACCCATTTATACAAAGTACATCTTTTAGACCTCCTGGAAGATCTCAGTTGGGCTGTTTGTTCTTAATATTTAAGTTATAAAGTACACACTCTAATGGCATCATATGTATGTTTAATTGTAAGCTTATATAAGTTGTAGTCTTGTTTAGTGGTGTGATTATGGAAACACCTGAAATTGCCAAGGGGATAGCATTCACATCAGTAAAATACCTGTTTATTGTCTTCATCTGCAG
Seq C2 exon
AAAGAGTACAAAAAAGCCTTGGAATTAGAAATTAAAGGAAAAGGTCTGTCAGAACTGGCTTTGGAAACACCTGATTTTGTGAGAGCAAAGAATGCCACTGACATTGCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020417:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.394 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=28.9),PF0088013=Nebulin=PU(55.2=42.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATACAGGAAGGATCTGGAGGA
R:
GGCTAGCAATGTCAGTGGCAT
Band lengths:
222-1063
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]