GgaINT0049815 @ galGal3
Intron Retention
Gene
ENSGALG00000012495 | Q9DEH4_CHICK
Description
NA
Coordinates
chr7:36822017-36822644:-
Coord C1 exon
chr7:36822540-36822644
Coord A exon
chr7:36822122-36822539
Coord C2 exon
chr7:36822017-36822121
Length
418 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCT
5' ss Score
7.33
3' ss Seq
CGTTTTGTATTTTGTATCAGAAA
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATCAAATACAAACAGTTGGCAGAAATGGAGAAGGCCAACTACACCAGTGTTGTCGATACTCCAGAGATCATTCATGCCCAGCAGGTCAAAAACCTTTCAAGCCAG
Seq A exon
GTATCTTGAGTGAAGAGATATAATCACTGCTCATGTGGGAACCTTGAGTGGATACTAATCAGGAACACCTAAATAACCTCCTGTCACAGCATTCGGGAGATACACCGGAAAAGCAAATGTTGGCAGAACGGTGACATGGCATCTCTTCAATTTAATATTGAAATCAGTTTATTTTAATGCTGTGTAAAGTGGAACAGTAATTTCTATTGGTTTTGCAGTACCAAAGCTATTTTTGTTTTAAGTAAATGTAGCTGACTTTTCCTATCCCTTACTAACTTTAAAATGAATCCTACACAGAAGTGTATTTGAAACAGAAGTACAGATTTCCATAGAGGTGGGCATTATGCAACAGTAAGTAGAGACAGGCGTTGTATTAGTTCTTCTGTCCTAATAGCATACGTTTTGTATTTTGTATCAG
Seq C2 exon
AAAAAGTACAAGGAAGAGGCAGAAAAGACCATGCCATACTATGTGCCTGTAGCAGACACACCAGAAATGCAGAGAGTCCGTGAGAATCAAAAGAACTTCAGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012495:ENSGALT00000020410:127
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.152 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAATACAAACAGTTGGCAGAA
R:
GCTGAAGTTCTTTTGATTCTCACGG
Band lengths:
206-624
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]