RnoINT0099958 @ rn6
Intron Retention
Gene
ENSRNOG00000006783 | Neb
Description
nebulin [Source:RGD Symbol;Acc:1311134]
Coordinates
chr3:37679696-37680761:-
Coord C1 exon
chr3:37680657-37680761
Coord A exon
chr3:37679801-37680656
Coord C2 exon
chr3:37679696-37679800
Length
856 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTTGGAACCTTTCCCCAGAAA
3' ss Score
6.17
Exon sequences
Seq C1 exon
ATTAAGTACAAGCAATCGGCAGAAATGGAAAAGGCCAATTTCACTTCTGTTGTTGATACCCCAGAAATTATCCATGCTCAGCAGGTCAAGAACCTCTCTAGCCAG
Seq A exon
GTAAGCATGTCCCTTAGGTCGAAGGTCTTCGTATTCCTCACATGCTGTTTTCTCATATCCCAGCTTCCCCCACCAAAACAGAAGGCATTACTTCCAATGCAGGTCTGAGCGAGAACGGAGATTTCTGATCAGATTTAAAGATAGACTGTAAGAAGGGTTTGGGTGTGGGTATCTCAGTGGTAGAGTGTGACGCCCTGGGTCACTAAAGCCCTGGAAGAAAAAAACTCAAAACGCTGTGTGGGAATTTCCAAGCGCTGAAGAGGGTATCCGTGATCCAATTCCTGATTCATAAATATCTTAGCATCTGTTATGATGTGGGTTTAAGGTGTGTGAGCACAAGCGGAAGACCCAGTAGTAGACCACTTGTATTGTATTGTACTGAATGAGTAACTTGAGCCACACAACCTGCGTCATCCCAGGCTGGATAGCGTCTACCGTCTACCTCCCTGCAAATCCTGGGACGGAAGGGATGGAAACTGGGTGGGGGAGGGGGGTCACACACCTGTAACCTCTGCGCTTGGGGAGAATGGGACAGGAGGCCAGTGTGGACTGAACAGCAAGACCTGGCCTGGCAAACCAAACAAATATAAAAGTGAAAATAAAGACAAACGGTGTCCTCTTCAGTGGTGATTAGAATGTACCTGCATGGGCAGGATGCGAAGAACCTCCCATCTGCTGTAGTGGGAGGCCTGTCTTAGGTTTCCTGGCACACACACACACACACACACACACACACACACACACACACACACACACACATATATATATATATATATATATATATATATATATATATATATATATATATATATAACTATGGGGCTTATCCTGTCTATTTCTTGGAACCTTTCCCCAG
Seq C2 exon
AAAAAGTACAAGGAAGATGCAGAGAAGTCCATGTCATATTACGAGACTGTCTTGGATACCCCAGAGATGCAAAGAGTCCGTGAGAACCAGAAGAACTTCAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006783:ENSRNOT00000059461:98
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=NA C2=0.429
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATCGGCAGAAATGGAAAAGG
R:
AGGCTGAAGTTCTTCTGGTTCT
Band lengths:
198-1054
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]