GgaINT0049909 @ galGal3
Intron Retention
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18763564-18764315:-
Coord C1 exon
chr7:18764265-18764315
Coord A exon
chr7:18763652-18764264
Coord C2 exon
chr7:18763564-18763651
Length
613 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAAT
5' ss Score
3.54
3' ss Seq
TATTTGATTTTTTTCTTAAGGAT
3' ss Score
8.01
Exon sequences
Seq C1 exon
AAACTTCCAAGCAAGTTCAAGAAGATCTATGCAGAATTTGAAAGCTTAATG
Seq A exon
GTGAATAGCAATAGATCCCTTATTCTGTGCACAATCTGAGCTAATTCAGTTTCTGAGTAACTGATTTGAATTCCTTGATTCAGAACATTTTATATGCCCTTGTTTGACTTTAAGAAGTTTATGATCCCATTTTAGAGCTGCTAAAACAAGTATGTATGACTAATAAATTATACTCTTAGGAACCTACTCTGAGAGAACGTATGTATCACTCAGAGTTAATCTGGGAATCTCAGAAATGCTTTATCGCATGTTTTCTGATAGCACATATGGGAAATTTTATTTTACAACCTGAATTTTTCCAGGCAATACATTTAATGTTACAGCATATGCAGTGCTGGCTCTGCAGCTGCAGCGAAGGAGGTAAAATGTTTGGTCCTTTTATAAACAACTTTTTCGTAATCAGCTCTTACCTTGCTATTTGGCATAAGAAATGTTTGTGTGCGGCGCGTAAACTGAATGGGAAAATGATAAAAGGCTTAGCTTGCAGATGCACTTTTAAAGCTGCAAGAGAAAACGATGACTTTAATAAATGCCACGGCACCTAAATGAATGCATACAGTGTCTTAATACGTGTAATCATGCATATTACTAATTATTTGATTTTTTTCTTAAG
Seq C2 exon
GATCCATCAAGAAACCATAGGGCCTACAGACTAACTGTAGCTAAATTGGATCCTCCGATAATTCCTTTCATGCCTCTGCTTATAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357:ENSGALT00000015238:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.6=100)
A:
NA
C2:
PF0061714=RasGEF=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]