GgaINT0049990 @ galGal3
Intron Retention
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27721279-27722860:-
Coord C1 exon
chr7:27722753-27722860
Coord A exon
chr7:27721306-27722752
Coord C2 exon
chr7:27721279-27721305
Length
1447 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGA
5' ss Score
6.21
3' ss Seq
GGTCTGCCCTCATAATCAAGGAT
3' ss Score
3.69
Exon sequences
Seq C1 exon
GTCGGATTCGTACGAGGAGGCAGAGCTCTGGCAGTGCTACCAGCGTCACCTCAACACCTGCTGACACCCGAGGCCGCAGCCGGGCTAAAGTGGTTTCCCAGTCCCAGC
Seq A exon
GTAAGAGGCGTTTTATTTCTGGGGGAGGAGAAAAAGCAGTTATTAATACATTTCTCTTGAATTGTGGTAGCATCAGCTGAGAATTGGGCTCACTTCTGGTGAATAAATACTTGGATACGTAACATAATGAATCCCTGCTTAGCTAGCTTTCAGTGTATGCTCTTACTGACAAAGGGCACCAAATCAGAATGTTTAGTTGCTGCTTTTTTAACCTATTGTGCAGCAGAAGTGCAGGTTTTTGTGACGTGCTAGACTAAACTTGTACTGGGTCCCACTGAGATGCCCTCTGTGTCTTTAGCTGATTGCTGTCCTGGGTTCTTGCCCTGTCAAGCTTCTCCTGCTTACGTTACTATACTTCTGTATGTGTAATGTGAACTGTCTGAAGTTAACGCGTGCTTTAGCATCAGCTTAGAGTGGAGCGCTACCTACTTTCTGTAGATAGGAGGGAGGTGGTTCTGTTCTCTTTATTCACATGATACATCCCTTCTCCCTGACTTCCTTACAAGCTGTGGTTTCTCCCAGGAGCCATGCATACGGTGTTGCTGCGTATTCCTCATGTGTCTAAAGAGAACTTTGTCACTCAAACTTCAGAAGAAATGGGGCAAGGGGGGAACTTCTCAAGTTGTTTCGCCTTATTCAAGAGCTCTGCTTTGTTCGTGCTATCATTGCTTTGCTCTATCATGCTGTAGATATGGGAAAGCAGTTTATAGCATTATGATAATGAGGGATGGCTGAAGAGAGAAGTATTATAATTGGGATGGGGCAGAATGGAAATCTTTACATTGAAGTAGTGAAGGAACTGGGGCTTTGATATTCTGATCCAAATTCCTGTAGTTTAGAACTTAGAAATTGATTCAAAGCCATAAATAATCTTTAAATTTTAATTTTTTTTACTTTAGTGAGAAATGATCAGATAAGACAAGTTTCAGATTTATTTAAGGAAGTGTGGGGTGATTCACACATTATGGGTTTAATTTTTTTCATGCAATGTACTTATGAGGCTGTAGGATAGTCACATCTGTACCTGTTGTTTGTCTAGTTTGTTCAACCTTGATTCCAGCCTAGCACAACTAGATGTGATCTTTAATCTCCTAAGCCAAGCATTATGTGAAGTGAATAATGAATGTATAATATGTTCACAGGTACAAACTTGTATGCCTATGCATTTGTAGCTTTGTTTCAGTTTTACAGCATGGGCTTGGGGTATAATTTAAGCAGAACCTGGGTCACAGTGTGGGTTGATACTGCTGAGAAGCTGTTAAGCCTTTGGAAATTAAATCACTTGCATTTGCACATTAACTCACTGCATTCTGCAGGGGCTCTTGGAGTGGCACATTTGTGAATATATCTGTCTGTGTATAGCATAAACCGCATGCTGAACGCTGTATTGTCTTCATGTCTTTTAATCCACTTTTTGCCTGTCCTTTGGTCTGCCCTCATAATCAAG
Seq C2 exon
GATCCAGATCAGCTAATCCTGCTGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645:ENSGALT00000019030:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]