RnoINT0036763 @ rn6
Intron Retention
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34498748-34502090:+
Coord C1 exon
chr13:34498748-34498850
Coord A exon
chr13:34498851-34501922
Coord C2 exon
chr13:34501923-34502090
Length
3072 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
3' ss Seq
TCATTCTGCTTCACTTTTAGCTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
NTCCGCACCAGACGGCAGAGCTCCGGGAGCACCACCAATGTTGCCTCCACATCCTCCGACAGTCGGGGCCGCAGTCGAGCCAAAGTGGTTTCACAGTCTCAGC
Seq A exon
GTAAGCACTGCATGTTAATGCCTTTGTCTCCTTAGCTTCCTTCAGGAGCTCATCCCAGCCAGACAGGTTTCAGTGTCTCTGCTGACATCAGCGGCTTTTGAGATACTCCAAGTAGCCACACTGCTAGGTAGGCTTCAAAGATGAAACATTCCAGAATGTTTTGGTCTCCTTTTCTAGGAGACTCCTGTTTCATGGGCTGGGGGAATGACTCTGTAAAGTCCGTGAGGACCTGAGCGAGCTTAGATTTCCAGTCCCCACATAAAATTAGGTGTACTGACACAAATCTATAATCCTGGCACCAGGAGATGGAGACAGCTGGATCCCTGTGGCTTGCTAGTCAAGTGATTGAGTCTAATTGGTGAGCTTCAGGTCCCAGAGAAAGGCCTTGTCTGAAAAAAGAAGGTAGTGGTTGAAGATGGCCTCCATGTACACATGCACACACAGGAGAACATACAGCACACATGTTGGTATCGTCACACATTAAAATACACATTGACTCCCTATCCTCTCATCTTTCAAGTTAAAACTTACCTGTTATGTAATCCGTCTCGGCAGTAGGATTTCCTGAGGGGAATGGGAGCTGAGAGATATCTTACTTTTTTTCTCTCTCTTTTTTTGGCTCTTTGCTGTGGTTTCTGCCAGGTTCCCACCCCAGCTGAGTTAGTAATAAGTCTCTCTGGCTTTGAAATCCAAGTGTCACCTGGACATAGGAGGATGAGAATTGCTTTTCTAGTGGGACTTAGGAGATTAGGAGAGGTTAAAGCTCAGGAACATACAGGCCAGACCTTGAGGCCTCTCAATTCCAGATTGCACTCACAGGAACACAGGTCACTACACAGCACATGGTTGAGCCTATACCCCAGGCTTGCACAAACAATTCAGTATTTGAACAGTGATCTGTCTTTGAGGTAAATACACTGATACCACAAATGTGGGCATACAACAGTCATAATCCTGGTTTGGTTTGAAGTAGATTTGTTAATTCCAGATTTAGGGTCCTTAAGGATCAAGACATTTTAGATATTGGAAGATTATGGAAACTCATAAGCATTCAAGGATGAAAACAGCCCACAGCAGTGTTCTTCCAGCCTCTGGTGTCTTGTTAAAGAAGGAAGGGGCTCAGGGGACCAAGGTGTGCTGCTTTCCCCTTGCTGAGGCCTGGGGTGTGCACTGAGAGGCAGATGGCTCGGCACGTGATGGACGGATGTTTCATGAACGCACCTGGAATAAGTGTTAAAACTGTGCTGTGCAGAGAACAGAGCATCCTTGGGGCCATAGTGATGTTCTACTGTGCTTGTGAAGGAGCCTTCTGTGTTGTGTCGCATGCTGACCTTCTGTATTGTGTTATGTCTTTTAATCCACTCTTGCCTGTCCTTTGGTCTGCTGTGCTAACGAAGGATCCAGATCTGCTAACCCTGCTGGTGGTAAGCCCTTTCTCTTGCCTTTCTGTTGTCATTGCTGTTCTGTCTCAGCTCTGCTCCTTGCTCAATATTAATTTCCCTGATATGAACTTTCTCGATTTTCCTGGATTTTCAAACACTAGAGTTTGAAATGCATTTCTTTTTGCCCTCGACATAACTTAATAATTTATTTTATGTTCAAGTCTTGGGATGGTTTTTCACAGTAATGTGCATTACAGATTTCTACAGTGATTTTTCCTTCCAAATTGTGTGTAGTTTAGTCAGTATTGGGTATTAATTTTCTTGTATAGCCAACAAAGTGACTCATTTGAATGGCGATAGTTTTAATGTGTCACATATTTTTGAGACATATTCTAAGATATATTTTTAAATCTTTATTCTGTAAGGAAGAGTAATTTGTGGTAAGTGTTCTTCTAAGGGGTTTCGTTTGTTTTACTTTTTTCTATAGGTCATTCTATTCTGCATAATAATTATTTATAATTTGTTTTAAAATTTTTACTACCATCTCTATTTAGGAGACAATCTGTTAAGTGGCTGTCTGTCATTTTGTGTAGTTTTGTATTTTAATGTTACTATTTTCTCGAGAATTCTATTGCACAGAAAATGTTTATAACTATATCTGGATATTTAGCTATTAAGAAGGATTAGCAGCTCTGATATTTATTTGTGATTTCTGATTTTATTGCATATTTCTCAGGGAATGTGCCTCATGTAATTTTCCAGGTTTTTTTGTTTGTTTTGTTCCTTTTTTGAGATTGGCTTTTAGGCTTAGTTTATAAAATTTGATGTTAAAATGAACAACCCCCCCCCAAAACCCTGTGTTTTCCAATATACACATGTGTACAAGAGGAGTATATGAAAAGTCACGTTGTGGAATGTTAGCGGGCTGGGTGTAGTCACACAGACCCAGTTGGCTGCAGCATCACAGGGGCACAGGCCGAACTCTGGTTGCACATGAGACTGTTGCTAACAGGAGTTGTTATGTAAGTCGTAGTTATGTATCCAGTACACGCGTGTCATCAAACACTAACAGTTTTGATTGCTGGCTCTGTCCATTTCCCTGAGGCTATCAGGCTGTCCAGTAGGGTCTTTTCCTATTTCTCCCTGTGTTCCTAGCTTTTCCCAGTTTGTCCTCCATCTGTGTTGTTGTAGGTAGATGTTTGTACTGACTGTCTCTGAGCTCACTTACCACACCTTCTACACCTCTGTGCCTCTTCTTCTGTTGCTTGATTTTGAGTGTGTTATTTGATCCTATAGACAGTACATGGTTTGGTTTCATGTGTATCTGTTCAGGATCTGGGCTGTAACTCAGTAGTAGTACACTCAGTCTCCAGTACTGGTAAAGGGAGTAAATTGAAATTTTCTGTGTTTTAATAGATAAATGGTATCTTTAAGCTTATGTGTACCATCTACTCTGTGATTTTTTTTAATCATTTCTAGTTCTTTTGTCCCCATGACTTCCATTTGTTAGATCAAACCCAGTTTCCCTGAGTTAATGTCTAAGAAGTTTTGTTATGTTTCTATTTCTCCAGTGACTTACTCAAGGAGACAGTTCTTAGAGCTCGGGCATGTGGTTCTGGGAGAGAACCATGCCCCTGGGACATGTCATCTGACTCTCATCTCACGGTCAGTCATTCTGCTTCACTTTTAG
Seq C2 exon
CTGGCAGCCGGTCAAGTTCCCCCGGGAAGCTTTTGGGAAGTGGTTATGGTGGACTCGCTGGGGGCTCCTCAAGAGGCCCACCTGTAACACCATCTTCAGAGAAGAGAAGCAAGATCCCCAGGAGTCAGGGATGCAGCCGAGAAACAAGCCCTAACCGGATTGGATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376:ENSRNOT00000061513:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]