GgaINT0050311 @ galGal3
Intron Retention
Gene
ENSGALG00000011224 | SLC4A3
Description
NA
Coordinates
chr7:23593639-23594502:-
Coord C1 exon
chr7:23594308-23594502
Coord A exon
chr7:23593846-23594307
Coord C2 exon
chr7:23593639-23593845
Length
462 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
TACTTCTCTCACCTGCCCAGGTG
3' ss Score
7.94
Exon sequences
Seq C1 exon
TTCTGCCAGACACAAGGCATTGAGTACCTGACAGGCAGAGTGTGGATTGGTTTGTGGCTCATCGTTTTCATCTTCATTATTGTGGCAGCTGAAGGAAGCTTCTTGGTGCGCTATATCTCGCCCTTCACCCAGGAGATCTTTGCTTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTACAAACTGTACAAG
Seq A exon
GTGAACCTACCCCTGGGAGATGGGCTGCCACGTCTCTTGAGGCTCCCAGGAACCTGCCCCTTCAGCATACACGAGGCAGCAGAACAGGGCCATCACAGCCATAGCTTCCCTAGGTGTCGTGCAGAGCAGCTCTCTGCTGAGCAGCTCTCTGCTGGCCTCCCACAGCCCAGCACAGCCAGCCCCTGTGCTGCCAGAGGCTGGCAGGGTGATCCCTAACATCTCCTCCCCCTCCCTTCCTGCAGGAGGCATTAAAGAGAGGCCACTTTTCTCTCCCCAGCCCTTTCCAGCTGGATAGGTTGTGAGGCGAGGTGACAGATGCTGAGATTGTCTGTGTCCACCATCTAACTACCCTTCCCTTTCTGCAGACCAGGATGCCCTCCACATCCCCTCATCCCCCTTATTGACAGTACCCTCTGTCCCTCCCTGCAATGACTGTGCCTGCTACTTCTCTCACCTGCCCAG
Seq C2 exon
GTGTTTGCAGAACATCCTCTGCTGAAGTTTTACCCACCAAACGTGCAGGGCGGCCTGAACGCCAGCATGCTCTCTGCAGATGCCATGTCACTGGGAATCAGGATGCAGCCCAACACTGCTCTCCTCTCCCTCATCCTCATGCTAGGCACCTTCTTCATTGCCTTCTTTATGCGCAAGTTCAAAAACAGCCGCTTCTTAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224:ENSGALT00000018302:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(32.3=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(12.6=36.2),PF0095516=HCO3_cotransp=PU(18.6=79.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGCAGAGTGTGGATTGG
R:
GGCTGTTTTTGAACTTGCGCA
Band lengths:
356-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]