DreINT0151503 @ danRer10
Intron Retention
Gene
ENSDARG00000028173 | slc4a2a
Description
solute carrier family 4 (anion exchanger), member 2a [Source:ZFIN;Acc:ZDB-GENE-051101-2]
Coordinates
chr2:32423958-32426924:-
Coord C1 exon
chr2:32426730-32426924
Coord A exon
chr2:32424171-32426729
Coord C2 exon
chr2:32423958-32424170
Length
2559 bp
Sequences
Splice sites
5' ss Seq
AAAGTATAC
5' ss Score
-0.39
3' ss Seq
AGTGTCCATTTACACCACAGATC
3' ss Score
6.72
Exon sequences
Seq C1 exon
TTTTGCAAGTCCAATGACCTTGAGTATCTGACGGGCCGCATGTGGATTGGGATGTGGTTGATCATCATTGTGTTACTCACTGTGGCCTTTGAAGGGAGTTTCTTGGTGCGATTTGTGTCACGCTTCACCCAAGAGATCTTCTCCATCCTCATCTCTCTCATCTTCATCTACGAGACCTTCTTCAAGCTTGGCAAA
Seq A exon
GTATACAAATTGTTTTTGTTGTTTTTGTATATACTAGAATTGTCACAAAATATTGATATTTAAAACTTATTGAAACTCATATCTTATAAACAAAACAGTGTCTCAGTGCCACTTTTTGGCAATGTCGATACAATAATGTGTGACATTCGCCTTTTATTTGTGGTGTTATGGCCCACCATAGTCTAATTTGTTCTGCCAGTTTCACTTTACTGTATAAATAGTCTACACATCAGCTAGTTTAGTAAACATAAACATCTGAGGAAAATTGACACATACAACATGATATTGTGTGCATTCAGTCTTAAAAGTGACAGCAGCCTAATTATCAACTTCCCCTGTCTTAAAAATGTTTGAAAAAAGGCAATGTAAGCTAGGTAGCTTTTTCTGTAATATTAAAGTTATTAAGTACATTTATTGATTTAAGAATTGTGAAATGTCACTGATATTTGCATTTTTCAGGATGATAAGGATATTGTTAAATGGGGAAAAATATCAAGAAAACATATTAGTGCTTATTATAAGCAAATTGTCTAGTTTTCTATCAATGGAATATTTATGTGGAATGAGACACTATTACAACAACAGGTACACCAGGTTTGCTTGCATTTAAATTACAATTTAATGTACAAAACATTATGAGATTTTTGGGACTACGATTTTATCTCTTTCTGATGTGATAGTCTTTGCCTGTAATATTAAAAAATGGAATCAAAATGTAATATTTCAGGGTATTAGAAAGATTTTTAAAACATTTATTTTAAAACTGTTGTATTTTAATATATGTAAATTATTTTCTACAGAAAACAATTTAATATGTTTAAGTCAGTTTTAAGCATCCTTGTTGCATAAAAGCAATTACTTTAAAGAAATCCCAGCTAACAATTTAAGGTTAAAAAAACGTTTCCTTAATGTTCCTATTAAGTTACAGTGCTAAGTAGACAAATCTATTACAAATCTATCATTTAAATTCATATTTTTAATAGAAAGCTATACAATATTATATGTGTGCATATAAATTAGTTTAGTCAATAGTAAAGCCAAATCTGCAGCTTATCTAACAGAATAACTTATGATAACAGTTAAAAACTATGTATATGTTATAGAAAAATAGTAAATACAAATTTTTAAAAAAGAAGAAAAATCAAGAGAAGCAAAAAAATTTACAATTTAGTTGAAATTTTGTTGGTTGTAATTTTATTTTGTTATATTTAGCTTGCATTTAATTGTATTCTTTTTCAATTTCTAAAGATGCTCTGTGACTAAAATATTATTTTAATAAATATATCTGTTTAATAAATCTGTTTTGTTTGAATGCACCAAAATACATTTTCTATATTCATTGAGAAATGGATCGTTATTGTTCAAGGTTCTTAGAACGTTCAATATGTATATTTTTAGAGACAGAATAATAAATACATTTTTAAAGACTTTATTTGTAAGAATTTTTATAAAGTTTGCACAAAACAGTAAAACAAAAGGTCAACAATAACAAAACAAACAAACAAATATAAAACAAACATCCTCAATACTAGTTCCCCTTTTGTGGCTTTAACAGAAGGGACACATAGCTAACAGTCAGCAAACATCAAAATCTTCAAGCGTCACACATAGCACAGCAAGTGTACTTGTAGGGTGCATACACAACTCTAATACAGTAATAACAAATAAATAAATTAAAATGTTAAATGGAAAAAGTAAAAAGATATACAATGCACGTAAAAAGATAACCATTCAGTGTGTAATTGCAGGAAGGTTCTGTATACCTTTATTTCAAGTAAGCCCATTGTGAAAGGCATTACAAGGTGACAGTGAGAGGAAAGGCAGGAGGATCTTTTGAGATTGTATGGGATTAAATATCCTCCCCCTCTAAGAATTGTAAATTGTCAATGTATGTAAGAAAAGGAGACCATGTTTCAAAAACTACTTTTTGAACCTCTGAGAGTAAATTTGATAGTTTTTTTCAAGCTGAATAAAATACATCAGGTCTTTGATCCATCTACTATGTATTAGGGGCTCAGTTTATTTTCCAATAGAGAAGGATTGAATGTCTTGCAAATAGTGTGACGAAAGCAATTACTCTACGTTTCTTCTTTAAGCAAAAAATTTTCGAGGCTGGTTTCAAAAATTGCCAAAAGAGGTTCAGGTTCAAAAAGAAAACCATAAAAGTAACTAAACGACATGTAACTAAATCTCCATTGATTTGGACAGAACCAAAACATTAAAGTAGTTTTTTGGTGATAACTTTATTCAAAATATTTTCATAATAATTTGGTCTTATGTCATAATAATGTTTCCAGAACGTTATTAAAATGTTATTAGATTATTCCATTGTTATTGTTCTAAGAACATATTCTTTTCTATCAACATTACAAGAATGTAACAAATAAAATGTAACACTTAAAAACATTTGAACAACTTTTAAGGAATGTTACAGAATGTTCAGATAATATTCGCTGTTGACTGCGTGCCATGGAGCCCATTTGTTTTACTGTATCGAGTTTATAAAGGACAATGAAGTATGACTAGCAGATGTTCAGACAGTGTCCATTTACACCACAG
Seq C2 exon
ATCTTCATGGATCATCCTCTCAGAAGCTGCTCCGGTCCAGAAGAAAATGCCACCTCTTTATCAACAGGCTCCAATGACAGCAGGTCTACAGGTGCTTCTCAAACACTAAACCAGCCTAACACAGCCCTCCTGTCCCTGGTGCTCACGTCAGGCACCTTCTTCATTGCCTACTATCTGCGCAAATTCAAGAACAGTGCTTTCTTCCCCGGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028173:ENSDART00000041319:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.183
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(31.7=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(14.4=40.8),PF0095516=HCO3_cotransp=PU(19.2=80.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]