RnoINT0138453 @ rn6
Intron Retention
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7266690-7269628:-
Coord C1 exon
chr4:7269434-7269628
Coord A exon
chr4:7266933-7269433
Coord C2 exon
chr4:7266690-7266932
Length
2501 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CCTGTATGACTCCTTTCCAGATC
3' ss Score
8.21
Exon sequences
Seq C1 exon
TTCTGCAAGAGCAACCAGTTGGAGTACTTGGTGGGCCGAGTTTGGATTGGCTTCTGGCTGGTGCTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTCTCCCGATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTATGAGACCTTCTATAAGCTGATCAAG
Seq A exon
GTGGGTATGCATGGGGTACAGGGGCGCCGGGGGCATCCTGTCTCATCTTCAGGGGGAAATGTTTTAATTCGGTTGTATTTGTTGTCTGTGTATGCACGCACACGGCTGTGTCCCAGTGCCCGTGTGGAGTTCAGAGGACAACCCAAGGGAGTTGGCTTACTCGTTCACCCTCTGATAGACCCCAGATTGTCCAGCTTAGCACCAAGCACCTTTACCCAAGGAGCCGCCTTGCTGGCCTCTGTCTGCCCTTGCTTTTCTCTCTTTATGCCTATATATGTCTTGTATCTTGGTTCTTCCTTCTGGACTACACTCCAGGTTGATTCTGACATCCCATGGAGTCTGTTCATGAGCACAGAGTGACATGGAGTCAAGAGAGGGCTGGAGGAGGTGGGTAGAACAGGAAGACTACTGGGAGTGTGGCAGAGATGAGGTACAGGGCTACAGCTGGCCTGCTGGCTTTCCTACCCCCACCCCCATCCTTCCCATGGCCTCATCATCACCAACACACAGCATCACATCAACTCCTTCAAAAACTCAGTTTTTTTTTAAAGACTTATGTATTTATTCCATGTATATGAGTACACTGTTGCTGTCTTCAGACACACTAGAAAAAGGCATCAGATCCCATTACAGATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAACAGTCAGTGCTCTTGACCACTGAGCCATCTCTCCAACCCAGAACTCACATACTTTGAATAACAGGAGAACACACACTTCCATTCGAATCCAAGAAATGTAAAAATGAGGGCTCAGAGTGGTCCACCCAGTCACAGTGTGATGTCCAACACACAAGCGTCTCAGGAGCCCCGGTCGGTCCTCTTCCCTTAGCCTTTGGAGCCCAGCTTGGGCTCCGGCTCCCTCCCACTCCTTCCCCCACTATCCCAGGTAGCCTTATGCTTGCTTGTACCAAACTCTCTAGGCTCAACTAGGTCTTTTGCTTTGATTTCATTTTTCGTTTTTTTTTAAGATTTATTTATTTATTTATTTATTTATTTATTTATTATATATAAGTATACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTAAGCCACCATGTGGTTGCTGGGAATTGAACTCTTGACCTCTGGAAGAGCAGTTGGGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCAAATTCTTTATTATATACATCATGCTTGCTCAACATGAGGCTGGACAGTTGGTTTCCAAAGTCTCTGAATGTTTTCTAGATACCTACATGTAAGTGAGTGTGAAAATATTTGGCATTCTTTTTCAAATCTGAAATTCTGAACAGGCACATATGTGAAGAGAAACATTGCCATCCATAGATAGCGACATTTAAGAAGCTGCTCCAGGCCTTGGTCCGTACAAGCTTTGGCTGTGAAGATGAAGGAGATGGTTACTCTCAGAATGCCATAATAGGGGTTAGGGTTCGAGCTCAGTGGTAAAGTGCTGGCCTAGCAAGTGCAAGACCCTGTGTTCAGTTCTTAGCTCCAGAAAAAAATTAAAAACTGGAGTCAAAAATGCCATAATAGTAAAATAAGCTTAAAGAAATATAATTTGGGCTTTTTGGAACTCATAAAATTAACCGAGATTCTTGTGCTGAAGTCCATTAAGAAATCTTGGGCCTGGGTGCAATGGTGCACCTTTGATCCCAGCACTCCAACGGAGGACACAGAGGCTGGGAGATCTCTGTGAGTCTGAGACCAGCCTGGTCTACAGAGTGAATTCCAGGCCAGCCAGGGCTGCACAGAGAGACCTTGTCTTGAAAAGGGAAAATGAAATATTGGTAGAGGGCCAGCAAGATGACCCACTGGGTGAAGCTACTTGCCACCAAGTCTGATGACTCCAATTTGATCCTTGGGACCCACCTAATAGTAGGACAACTGCTTCCCAAAAGTCATTGCAACCTCCACAATGGGTGCCATGGGTAGCACATGCAGGTGCGCACACATGCACATGCATACACACACACACTTGCACTTCTATGTGTATACATGCATGCATGCATACATTCACATACTAAATAAATGCAATAAAGTAAAAGAAAAACGTAATGTTGGTGCAAAAACCAATGAACGAAGTTAAGTGAAAGCAGTTCCCACACATATATTTCACGCTTTGTGTGTCTGGTCAGACCCTGTGCGTGTGAATTTGTGATGGTTACTTTTTTTGAGATAATGAATGATTTAGTGTTAACTTAAAATAGAATGGGTAAGTTTTTTAAAAACACTGGAGAGGTGCACACCAGCCCTTGCCTGATCTTCTCTGTATCCAATTTTAGTACATGTGCTGCTGAAGCAAGCACGAAGTCATTTTCTTAACCTAGTAAGACAAGCTTCTAGAAGGCAGGCTGGCCTCTGCCAAACTCCCACTCCAGCCCGCCAACATCCAGCCTGGCCCCAGCTCAGCCCATGGTCCTGTATGACTCCTTTCCAG
Seq C2 exon
ATCTTTCAGGAGCACCCCCTCCATGGCTGCTCAGTCTCCAACGACTCAGAGGCAGACAGCAGCAGTAACAATATGACTTGGGCAGCAACCACACTGGCACCAGACAACAGCAGTGCGTCTGGGCAGGAGAGGCCCCGGGGCCAGCCTAACACTGCCTTGCTATCACTGGTGCTGATGGCCGGCACTTTCTTCATCGCCTTCTTCCTGCGCAAATTCAAGAACAGCCGGTTCTTCCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347:ENSRNOT00000019666:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(13.0=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]