MmuINT0147142 @ mm9
Intron Retention
Gene
ENSMUSG00000028962 | Slc4a2
Description
solute carrier family 4 (anion exchanger), member 2 [Source:MGI Symbol;Acc:MGI:109351]
Coordinates
chr5:23941895-23944767:+
Coord C1 exon
chr5:23941895-23942089
Coord A exon
chr5:23942090-23944512
Coord C2 exon
chr5:23944513-23944767
Length
2423 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
GTCCTATGTGACCTTTCCAGATC
3' ss Score
9.32
Exon sequences
Seq C1 exon
TTCTGCAGTAGCAATGAGTTGGAGTACTTGGTGGGCCGAGTGTGGATTGGCTTCTGGCTGGTGTTCCTGGCCCTGCTCATGGTGGCTCTGGAGGGGAGCTTCCTGGTCCGCTTTGTATCCCGATTCACCCAGGAGATCTTTGCCTTCCTCATATCACTCATCTTCATCTACGAGACCTTCTATAAGCTGATCAAG
Seq A exon
GTAGGCATGCATGGGGTACAAAGGAACTTGGGGCATCCTGTCTTGTCCTTAATTCAATTCTATTTATTATCTGTGTGTTGGAGTTCAGAGGACAACCCAAGGGAGCGGGCTCACTCTTTCACCTTTTGATGGACCTCAGAGTAGCATCTTTATCCACTGAGCCATTTTGCTGGCTTCTGTCTTGCCCTTGCTTTTCTCATTTTATGTCTGTATATGTCTTGTATCTTGGTTCTTCCTTCTGGACTACAGACCAGGCAAATTATGACACCCCCTGGAGTCTGTTCATGAGCACAGAGTAACATGGAGTCAAGAGAGGGTTGGAGGAGGTGGGTGGAACAGGAATCCCATTGGAAGGGCGGCAGGCAGAGATGAGACAGTGCTACAACTGGCCTCTGCCCCGCCTATCCCCCCCATTCCCACCTCCCACCCCCACCCTTCCCGTGACCGCCTCATCACTGAACATCACAGCAACTTTTCAAAAACTCACAGGTTTTTAAAAAAGATTTATTGATCTATTTCATGTATGAGTATACATTGCTGTCTTTAGACACACCAGAAGAGGGCATAATATCCTAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAGGACCTCTGAAGAGCAGTCAGTGCTTTTAACCGCTGAGTCATCTCTCCAGCCCTGAATTCACATTTTTAATAACAAGGATAACATACACTTAAAATCCAAGACTGTAAAACCGAGGACCCAGAGGTGGTATACTCAGTCACAGCGTGGCTATCCAGCTCGTAAGCGTCTCAGGAGTCCCAGCTCCATGCTCATGGTCTCTTTCCTCAGCCTTTGGAGCCCAGGCTTGGCTCTGGCTCTCCTGCTCCTGCCCCACTCTCCTGCTCCTGCCCTTCTCTGTCTGAGGCAGATTTGTGCTTGCTTATACCACACTCTCTAGTCTCAACTAGGTCCTTTGCTTTGATTTCATTTTCAGTCTCAAATTCTTTATTATATACATCATGCTTGCTCAACATGAGGCTGAACAGTTGGTTTCCAGCGTCTCTGAATATTTTCTAGATATCTACATGTGACTATGAAAATATTTGGCATTTTTAAAAATCTGAAATTCTGAACAGGCACGTGTGTGAAGAGAAACATTGTCATCCATAGATACCGACATTTAAGGAGCTGCTCCAAGACATGGTCCATGCAGCCTTTGGCCAATGAAGAGGAAGATAGTTTCTTCTCAGAATGCCATATAGGGGCTATGGTTTTACCTCAGGGGTAAAGTGCTGGCCTAGCAAGTGCAAGGCCCTGCATTTGGTTCTTAACTTCAGAAAAAGTTAAAAACTAGAATCAGAATGCCATAATAGTAAAATAAACTTAAAGAAATGTAATTTAGAGCTGGGCAGTGGTGGTGCACGCCTTTAATCCTAGCACTTGGGAGGCAGAGGGAGGCGGATTTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCACGGCTGCACAGAAAAGCCCTGTCTCAAAAAAAAAAAAAAACAAAAAAAAACAATCAACCCCCCCCCAAAACAAACAAACAAACAAACAAACAAACAAAAAAAGAAATGTAATTTGGGTTTTTTGGGACTCATAAAATTAACTGAGAAACATGTGCTGAGTACATTAAGAGATATGGCAGCTGGGTGCAGTAGTGCACCTTTAACCCCAGTACTCCATCAGAGGACGCAGAGGCTGGTAGGTCACTGTGAGTTTGAGACCAGCCTAGTCTACATAGTGAATTCCAGGCCAGCCAGGGCTGTCTCGAAAAGGGAAAATGAAATATTGGTAGAGGGCCAGCAAGATGACCCACTGGGTGAAATTACTTGCCACCAAGCCTGATGACTTGAATTTGATCCTTGGGACCCACCTAATAGTAGGAGCACTGGTTCCCAAAAGTCATTGCAACCTCTACAATGGATCCCATGGGTGGCACATGCATGCCCACACACATACATAATACATACCTATGTGCATACATGCATGCATACATTCGCACACTAAATAAATGTAATAAAGTAAAAGAAAAAAAGTAATGTTGGTGTGAAAACCAATGAACTAAGTTAAGTGAAAGCAGTTTCCATACATTTCACACCCTGTGCATGTGAATTTGTGATGGTAACCTTATTTTTTTTTTCTTTTTGAGATAATGATTTAGTGTTAACTTAAAATACACTAGATCAAGTTTTTAAAATTATGGAACACTGTAGAGTTGCGTATCATCCCTTGTACAGGTCCATTCTGATCTTCTCTGTGTCCAGTTTCAGTACATGTGCTGTTGAAGCAAGCACTCAGTCATTGTCTTAACCTGCTAAGACAAGTTTCTAGAAGGCAGGCTGTAGCCCACCAACATCCAGCCTGGCCCCAGCTCAGCCCGTGGTCCTATGTGACCTTTCCAG
Seq C2 exon
ATCTTCCAGGAGCACCCACTCCATGGCTGCTCAGGCTCCAACGACTCAGAGGCAGGCAGCAGCAGCAGCAGCAATATGACATGGGCAACAACCATACTGGTACCAGACAACAGCAGCGCTTCTGGGCAGTCTGGGCAGGAGAAGCCCCGGGGCCAGCCCAACACAGCTTTGCTATCGCTGGTGCTAATGGCTGGCACTTTCTTCATTGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGGTTCTTCCCTGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028962-Slc4a2:NM_009207:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(12.9=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(16.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: