GgaINT1025690 @ galGal4
Intron Retention
Gene
ENSGALG00000028756 | SLC4A2
Description
anion exchange protein 2 [Source:RefSeq peptide;Acc:NP_990294]
Coordinates
chr2:286527-287009:-
Coord C1 exon
chr2:286815-287009
Coord A exon
chr2:286743-286814
Coord C2 exon
chr2:286527-286742
Length
72 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGACGGCCCGCACTGCACAGATC
3' ss Score
5.91
Exon sequences
Seq C1 exon
TTCTGCACGTCCAACGGGCTGGAGTACCTGGTGGGGCGCGTGTGGATCGGCTTCTGGCTCATCCTGATCGTGCTGCTGATGGTGGCCTGCGAGGGCAGCTTCCTGGTGCGCTTCGTCTCACGCTTCACCCAGGAGATCTTCGCCTTCCTCATCTCCCTCATCTTCATCTACGAGACCTTCTCCAAGCTGGGCAAG
Seq A exon
GTGAGCTGTGGGCGCTGCGGGTGCTGCGGGTGCTGTGGGGCCGGGCTGCGCCTGACGGCCCGCACTGCACAG
Seq C2 exon
ATCTTCCAGGAGCACCCCCTGCACGGCTGCGCTCAGCCCAACGGCACCACGTGGAGCAACGGCACCGCGGCACCCAACGGCACGGCGCAGCGCGGGGCCGCCAAAGTGACGGGGCAGCCCAACACGGCGCTGCTCTCCCTGGTGCTCATGGCCGGCACCTTCTTCATCGCCTTCTTCCTGCGCAAGTTCAAGAACAGCCGCTTCTTCCCCGGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028756:ENSGALT00000043503:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(31.5=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=PD(14.8=41.7),PF0095516=HCO3_cotransp=PU(19.2=77.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGACCTTCTCCAAGCTGG
R:
ATGAGCACCAGGGAGAGCAG
Band lengths:
175-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]