GgaINT0051024 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6922991-6923639:-
Coord C1 exon
chr7:6923503-6923639
Coord A exon
chr7:6923072-6923502
Coord C2 exon
chr7:6922991-6923071
Length
431 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TTTATTCTGTGTTCTTTCAGGCC
3' ss Score
11.98
Exon sequences
Seq C1 exon
CTAATGTTTGTGTTGTGAAGGTGGATGGGACTCCTTACCTGTGTAAAGCTGATGAAGTTGGAGAAATATGTGTGAATTCAGGCGCAACTGGAATGGCTTATTTTGGCCTCCTCGGAATCACCAAAAATGTGTTTGAG
Seq A exon
GTTTGTTTTTTTCTTATGCAGTGTTGTACCACTGGTATTTCTTCTTGCAAACAAACTTTTGTTTCCAATACTTTTACATTTTTATTACTTACTGTCTTTCATTCTTCATGTCAGAACATGTCAGCTGTCTCTGTATTCTGCAGCTCCACATTCTGTCAGTGTTGGCATTTGATTTCATCTTAGTTACGTATTAACCCATCAGTCTTACGTAAAGTTACCTGTAGACAGTTTAGTTGGGACACAGAGTTAGAAATTAGTTTAATATTTGTGATCTTCATACAATCAATATGCAGTTATAAATTAGTTGAAGAAGCTTCTCTTATGTATTGCAAATGGTATGGTTGTTTTTCATCTGAGCGTAGAGCTGAAGTGAAACAGAGGCAGGAAGTATTTTAACTGAGTGTCTGAATATTTATTCTGTGTTCTTTCAG
Seq C2 exon
GCCGTTCCAGTGACAGCCAGTGGTGTACCTGTTTCAGATCAGCCCTTTACAAGAACAGGACTTCTTGGCTTCGTGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTTTGTGTTGTGAAGGTGGA
R:
GACCCACGAAGCCAAGAAGTC
Band lengths:
214-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]