MmuINT0049578 @ mm10
Intron Retention
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100175201-100178522:+
Coord C1 exon
chr15:100175201-100175337
Coord A exon
chr15:100175338-100178441
Coord C2 exon
chr15:100178442-100178522
Length
3104 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
TTTTTCCTTTTGTCTTTTAGGTG
3' ss Score
13.85
Exon sequences
Seq C1 exon
GCATGATGTGCATTGTGAAACCAGACGGACTTCCTCAGCTCTGCAGGACAGATGAGATTGGAGAGATCTGTGTCAGCTCCAGGACTGGAGGGATGATGTACTTTGGACTTGCTGGTGTGACCAAAAATACATTTGAG
Seq A exon
GTACATGGTGCTATTTCCCGGGGTGTTGAGTGACATCGGGTGTTACTAGCAGGCCTGCTGGCTGCCGGATGGCATGGCACTGTTCAGCATGGATTAGTGGCTGGGATGGTGTCTTCAGGGCCTGGTACCTAAGGTCAGGTTCTACACACGGCTGCTGTGTGAGCTGCCTAGCCTCGTGGAGGTCCTTTATCTTTAAGATATGAATCTTAAAGATAAACTACTACCAGAGGTGGTAGTGAGTGCATGTAATCACTGCACTTGGGAGCCTCGGGTCAGGGCACTTCAGGTTCAAGGCCAACCTTGTATAATAGGACCTTGTCAGAACAAAGCAAAAGCGCCAGATGTGCTGGTGCCCACCTTTACTCACAACACAGGGAGGCAGAGCAGGTGCATCTCTGTGAGAGTGAAACCAGCCTGGTCTACAGAGTGAGTTCCAGGTCAGCCAGGGATACACAGAGAAACCCTGTCTCAAAAAGAAAAAAAACGAACCTACCAAACATAAAAAATCACCAAAGTGATTTTTTGAACACAATGTGAACAGTAACAATGCCTATCTTGTGAGCTGTTTTGAACACTAAATGAATTAATATTTACTCGTAGAAATGTATCTGTTGGACATTAAAAGATTTACTCTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCCGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAAATCTGATGCCCTTTTCTGGAGTATCTGAGGACAGCTACAGTGTACTTACATAGAATAAATAAATAAATCTTAAAAGATTTACTCTAGTGGATTTACTATTGTTAAAGCTTTTTAAGTCCAAGATTTTGACGTTGAGGGTCCTGTGACAATTGGGCTTGCTGTGTCAGACTGTTAACGACATGGAGCCGGGAGCTGGGGAACCACATGCTCTGTATGCTGGAGAGCCCGAGCTGAGATCTCCAGATGCCAGGCAAACAATCTGCCTCTCCCTTTCTCACCTATGAGACGGATAGAATTCCATTCCATTCGGAGGAGCTGACCTGGTTACTGTAGAGCGAACTAAGCTGTTACTATAATAACTCTAGTCACAAAGGAGGCAGGGCAGAGAGCTGCCCAGTCTGACAGCCCAGTGACCTGAGCTCAGCCCCCAGATGGGGCAAGTGGAGGGCTGACTGCTGCATGTTGTCCTGTGTTCTTTCTCTCAGTAGGCACTGTGCCATGCAGGTACGCACAGAGAGAGTGACGGTGGATATGGGTGGGTGGGTGGGTGGATGGATGGATGGGGCACACAATGAATGGGGTGGGGTGGGGTGCTGGAGCGATGGCTCAGTGGTGGGTTCAAGTTCCAACACCCAAGTGACAGCTCACAATCATCTGCAATTCCAGGCCCAATCAGATATGTACATGTAGGCAAAATACCCATAAATGCAAATTAAAAAAAAAATTAAAGGGAGAAAAAAAATCAAGAAGAAATTAAGAAAAACCCCAGGATATTTGTATAAATAAGCTATTTTCTATACATACACATGTACATACACAACTAGACAGTAAAGAAAAAGACATTTACTGATGAAATACAGTTTAATTCATGATGGAATATCTGGGTTTTTGTTCTGTTTCCCCATTTGGACAGTGGTAGTACACAGTGCTAGCTGTAATACAGGGGTAATGGTGTTAATGTGTAGCGGTTGTGTGGGACACCCTGTCACACTGCTGCTTGCCATTGTGAGAGATCAGGGTCACCCTATCCAGACAGAGACTGCATTCTAATCACTAATATGTCCTGAATGCAACCCCGGGTCAGGCACCATGCTCTCCTCTCCAGATCTGCTCAGATTGCTCTACCTTTACCTACGCCCAAGAGAGGATTTGAGAGCATTGTTTACAGCTGAGAAGAACCTGAGGCTCAGCTGCTGGCATTTACCCAGAATCTGCCTTGCCAGTAAACTGCAGAACTAGAATCAACTCTCAGGACTTCAGTATCCTCTGCCCTGTGAAGTGTTCTACTATACAAACACGGCCTAGATTGGTCATTACCTGATGGGGAAGCTATCCAAGATACATTGTCAAAGGTCTGTTAGTGAAAAGACAGACAGACAAATGTGTAATTGTGATCCCCCTTTTTTAATTTTTTAAATATTTTCCTTTTTAATTGTGCATATGTGATATATGCCTTTGTATGTGTGCTTACACACATGTGTGTGTGCACGCGTGTGCTCTGTGTATGTGCTTGTGTGTGTAAAACAGATGATGTGGGGCATCAACCTCTGACCCACTCCACGTTGTTTATGTTTGTCTGCTGTCTAGGCTTTAGTAGCTGCCTAGGACATCCTGGACGTCCTGCCGTCCATCCCCTCCCCAACAGCCTTTTTCTTGGGGGCTGGGGATCAGAACTGCAGCCCTCAGGCTTGCACAGAAGCCTATCCCGTGACCCTGGGTTAACATACTTAGTTGTGACATTAGTCTGTGTATCTTGTGAGATGACACAGTGGGTGAGGGCACTTCACGTGCTGTCTGATGTGTGCTACCCACAATCCACATGGCGAAAGGCGAGAGCCAGCTCCTGCATTTGCCCTCTGACCTCACAAGCATATAAAGGCCCCATACCTGCAGTGATACAAACACAAATCAACGTAATAAAATATTTGACTGTGAGTGTATAGCTTTTTAAAAGTCTGGAGAGGTAAACTCTGAACTGGATGAGATTCCTGGATTTGTTGCAGATTATACCTTCCAATAAGCATATTATGTGTGTGTGTTTATAATTCTATTTGGGGGTTGGTTGGTTGGTTGGTTTTAGAGACAGGGTCTCATTGTGACGTCTTGGCCAGCCTGGAGTTGCAGTGTATACCTGGCTGGCCTCCGAATCACAGAGCTCTCCTGCCTGACTCCTGAGTGCTGGAATTAAAGGCTTGTACCAACCATGCCCTGCTCAGTTAGAATATAATACATGTAGTTTTTTCTTTTAAGTAAGACTTTTAAAAATCAGATACATTTTTTTTAACTAACCAAGCTTTTCACCTTTTTCCTTTTGTCTTTTAG
Seq C2 exon
GTGATTCCAGTGACTTCTTCAGGCTCTCCTGTAGGGGACGTACCCTTCATCCGGTCAGGGCTGCTGGGATTTGTAGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026:ENSMUST00000100203:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(5.5=92.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types