Special

MmuINT0049578 @ mm9

Intron Retention

Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100005632-100008953:+
Coord C1 exon
chr15:100005632-100005768
Coord A exon
chr15:100005769-100008872
Coord C2 exon
chr15:100008873-100008953
Length
3104 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
TTTTTCCTTTTGTCTTTTAGGTG
3' ss Score
13.85
Exon sequences
Seq C1 exon
GCATGATGTGCATTGTGAAACCAGACGGACTTCCTCAGCTCTGCAGGACAGATGAGATTGGAGAGATCTGTGTCAGCTCCAGGACTGGAGGGATGATGTACTTTGGACTTGCTGGTGTGACCAAAAATACATTTGAG
Seq A exon
GTACATGGTGCTATTTCCCGGGGTGTTGAGTGACATCGGGTGTTACTAGCAGGCCTGCTGGCTGCCGGATGGCATGGCACTGTTCAGCATGGATTAGTGGCTGGGATGGTGTCTTCAGGGCCTGGTACCTAAGGTCAGGTTCTACACACGGCTGCTGTGTGAGCTGCCTAGCCTCGTGGAGGTCCTTTATCTTTAAGATATGAATCTTAAAGATAAACTACTACCAGAGGTGGTAGTGAGTGCATGTAATCACTGCACTTGGGAGCCTCGGGTCAGGGCACTTCAGGTTCAAGGCCAACCTTGTATAATAGGACCTTGTCAGAACAAAGCAAAAGCGCCAGATGTGCTGGTGCCCACCTTTACTCACAACACAGGGAGGCAGAGCAGGTGCATCTCTGTGAGAGTGAAACCAGCCTGGTCTACAGAGTGAGTTCCAGGTCAGCCAGGGATACACAGAGAAACCCTGTCTCAAAAAGAAAAAAAACGAACCTACCAAACATAAAAAATCACCAAAGTGATTTTTTGAACACAATGTGAACAGTAACAATGCCTATCTTGTGAGCTGTTTTGAACACTAAATGAATTAATATTTACTCGTAGAAATGTATCTGTTGGACATTAAAAGATTTACTCTGTACTTACATATAATAAATAAATAAATCTTAAAAAAAAAAAGGGGGCTGGTGAGATGGCTCAGTGGTTAAGAGTGCCGACTGCTCTTCCGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAACGAAATCTGATGCCCTTTTCTGGAGTATCTGAGGACAGCTACAGTGTACTTACATAGAATAAATAAATAAATCTTAAAAGATTTACTCTAGTGGATTTACTATTGTTAAAGCTTTTTAAGTCCAAGATTTTGACGTTGAGGGTCCTGTGACAATTGGGCTTGCTGTGTCAGACTGTTAACGACATGGAGCCGGGAGCTGGGGAACCACATGCTCTGTATGCTGGAGAGCCCGAGCTGAGATCTCCAGATGCCAGGCAAACAATCTGCCTCTCCCTTTCTCACCTATGAGACGGATAGAATTCCATTCCATTCGGAGGAGCTGACCTGGTTACTGTAGAGCGAACTAAGCTGTTACTATAATAACTCTAGTCACAAAGGAGGCAGGGCAGAGAGCTGCCCAGTCTGACAGCCCAGTGACCTGAGCTCAGCCCCCAGATGGGGCAAGTGGAGGGCTGACTGCTGCATGTTGTCCTGTGTTCTTTCTCTCAGTAGGCACTGTGCCATGCAGGTACGCACAGAGAGAGTGACGGTGGATATGGGTGGGTGGGTGGGTGGATGGATGGATGGGGCACACAATGAATGGGGTGGGGTGGGGTGCTGGAGCGATGGCTCAGTGGTGGGTTCAAGTTCCAACACCCAAGTGACAGCTCACAATCATCTGCAATTCCAGGCCCAATCAGATATGTACATGTAGGCAAAATACCCATAAATGCAAATTAAAAAAAAAATTAAAGGGAGAAAAAAAATCAAGAAGAAATTAAGAAAAACCCCAGGATATTTGTATAAATAAGCTATTTTCTATACATACACATGTACATACACAACTAGACAGTAAAGAAAAAGACATTTACTGATGAAATACAGTTTAATTCATGATGGAATATCTGGGTTTTTGTTCTGTTTCCCCATTTGGACAGTGGTAGTACACAGTGCTAGCTGTAATACAGGGGTAATGGTGTTAATGTGTAGCGGTTGTGTGGGACACCCTGTCACACTGCTGCTTGCCATTGTGAGAGATCAGGGTCACCCTATCCAGACAGAGACTGCATTCTAATCACTAATATGTCCTGAATGCAACCCCGGGTCAGGCACCATGCTCTCCTCTCCAGATCTGCTCAGATTGCTCTACCTTTACCTACGCCCAAGAGAGGATTTGAGAGCATTGTTTACAGCTGAGAAGAACCTGAGGCTCAGCTGCTGGCATTTACCCAGAATCTGCCTTGCCAGTAAACTGCAGAACTAGAATCAACTCTCAGGACTTCAGTATCCTCTGCCCTGTGAAGTGTTCTACTATACAAACACGGCCTAGATTGGTCATTACCTGATGGGGAAGCTATCCAAGATACATTGTCAAAGGTCTGTTAGTGAAAAGACAGACAGACAAATGTGTAATTGTGATCCCCCTTTTTTAATTTTTTAAATATTTTCCTTTTTAATTGTGCATATGTGATATATGCCTTTGTATGTGTGCTTACACACATGTGTGTGTGCACGCGTGTGCTCTGTGTATGTGCTTGTGTGTGTAAAACAGATGATGTGGGGCATCAACCTCTGACCCACTCCACGTTGTTTATGTTTGTCTGCTGTCTAGGCTTTAGTAGCTGCCTAGGACATCCTGGACGTCCTGCCGTCCATCCCCTCCCCAACAGCCTTTTTCTTGGGGGCTGGGGATCAGAACTGCAGCCCTCAGGCTTGCACAGAAGCCTATCCCGTGACCCTGGGTTAACATACTTAGTTGTGACATTAGTCTGTGTATCTTGTGAGATGACACAGTGGGTGAGGGCACTTCACGTGCTGTCTGATGTGTGCTACCCACAATCCACATGGCGAAAGGCGAGAGCCAGCTCCTGCATTTGCCCTCTGACCTCACAAGCATATAAAGGCCCCATACCTGCAGTGATACAAACACAAATCAACGTAATAAAATATTTGACTGTGAGTGTATAGCTTTTTAAAAGTCTGGAGAGGTAAACTCTGAACTGGATGAGATTCCTGGATTTGTTGCAGATTATACCTTCCAATAAGCATATTATGTGTGTGTGTTTATAATTCTATTTGGGGGTTGGTTGGTTGGTTGGTTTTAGAGACAGGGTCTCATTGTGACGTCTTGGCCAGCCTGGAGTTGCAGTGTATACCTGGCTGGCCTCCGAATCACAGAGCTCTCCTGCCTGACTCCTGAGTGCTGGAATTAAAGGCTTGTACCAACCATGCCCTGCTCAGTTAGAATATAATACATGTAGTTTTTTCTTTTAAGTAAGACTTTTAAAAATCAGATACATTTTTTTTAACTAACCAAGCTTTTCACCTTTTTCCTTTTGTCTTTTAG
Seq C2 exon
GTGATTCCAGTGACTTCTTCAGGCTCTCCTGTAGGGGACGTACCCTTCATCCGGTCAGGGCTGCTGGGATTTGTAGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-Dip2b:NM_001159361:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0050123=AMP-binding=FE(9.5=100)

							
A:
NA

							
C2:
PF0050123=AMP-binding=FE(5.5=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000097777f1397A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000023768, ENSMUSP00000097777, ENSMUSP00000104599
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr12:50699203-50704139 
ALTERNATIVE
HsaINT0048122
(DIP2B)
Human
(hg19)
chr12:51092986-51097922 
LOW PSI
HsaINT0048122
(DIP2B)
Rat
(rn6)
chr7:141840325-141844660 
LOW PSI
RnoINT0047741
(Dip2b)
Cow
(bosTau6)
chr5:29389437-29393158 
LOW PSI
BtaINT0049313
(DIP2B)
Chicken
(galGal4)
chrLGE22C19W28_E50C23:166890-167200 
ALTERNATIVE
GgaINT1011306
(DIP2B)
Chicken
(galGal3)
chrE22C19W28_E50C23:141907-142217 
LOW PSI
GgaINT0001072
(DIP2B)
Zebrafish
(danRer10)
chr23:27452381-27452987 
LOW PSI
DreINT0057198
(dip2ba)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"