GgaINT1011306 @ galGal4
Intron Retention
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:166809-167337:-
Coord C1 exon
chrLGE22C19W28_E50C23:167201-167337
Coord A exon
chrLGE22C19W28_E50C23:166890-167200
Coord C2 exon
chrLGE22C19W28_E50C23:166809-166889
Length
311 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
CGTCCTTCCTTCTGTTGCAGGTT
3' ss Score
12.98
Exon sequences
Seq C1 exon
GAATGATGTGTATAGTGAAACCCGATGGAGCACCTCAGCTGTGTAAAACAGATGAGATTGGAGAAATCTGTGTTAGCTCCAGAGCAGGAGGAATGATGTATTACGGGCTGGCAGGGCTGACAAAGAGTACATTTGAG
Seq A exon
GTATGTGCAGCAGAGTGTATATTTCTTTCCTGATTTCCTGTGTAAGAATGAATCTTGGATGTTCTCCTGTTTTTGTAATTGTGTTAATGTTGGTTTTTGAAGAGAGACCCAGAAGAACTCATTGCGGTTAAATATTTTCTGTGTTCCCCCTTCGTGAGGATGCCTCACAGTGCTAAAATGATTGCAGCAGGGATTTCCTCCTTATTGTTTCACTCACATACAATACGGCTCCTGATACTGAATCGTGGCAGCATGTTTTTCTAGCCTCAGGCAAATCCACTTTGCCTCCAACGTCCTTCCTTCTGTTGCAG
Seq C2 exon
GTTATTCCTCTGAACTCAGCTGGCTCTCCAGTGGGTGATGTGCCATTTGTCCGTTCTGGCTTGCTGGGCTTTGTTGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139:ENSGALT00000009909:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGTGTATAGTGAAACCCGATGG
R:
GGTCCAACAAAGCCCAGCAAG
Band lengths:
214-525
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]