GgaEX1019775 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:166389-167337:-
Coord C1 exon
chrLGE22C19W28_E50C23:167201-167337
Coord A exon
chrLGE22C19W28_E50C23:166809-166889
Coord C2 exon
chrLGE22C19W28_E50C23:166389-166516
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTCCTTCTGTTGCAGGTT
3' ss Score
12.98
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GAATGATGTGTATAGTGAAACCCGATGGAGCACCTCAGCTGTGTAAAACAGATGAGATTGGAGAAATCTGTGTTAGCTCCAGAGCAGGAGGAATGATGTATTACGGGCTGGCAGGGCTGACAAAGAGTACATTTGAG
Seq A exon
GTTATTCCTCTGAACTCAGCTGGCTCTCCAGTGGGTGATGTGCCATTTGTCCGTTCTGGCTTGCTGGGCTTTGTTGGACCT
Seq C2 exon
GGCAGTTTGGTGTTTGTGGTTGGAAAAATGGATGGATTGCTGACAGTCAGTGGGCGGAGACACAATGCTGATGACATTGTCGCAACTGGGTTGGCAGTAGAGTCAATAAAAACAGTTTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'36-32,'36-31,37-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
PF0050123=AMP-binding=FE(5.5=100)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCACCTCAGCTGTGTA
R:
CATTGTGTCTCCGCCCACTG
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]