HsaEX6066510 @ hg38
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
disco interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr12:50699066-50706665:+
Coord C1 exon
chr12:50699066-50699202
Coord A exon
chr12:50704140-50704220
Coord C2 exon
chr12:50706538-50706665
Length
81 bp
Sequences
Splice sites
3' ss Seq
TACTTCATTTTGTCTCTTAGGTA
3' ss Score
9.15
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGATGATGTGCATTGTGAAACCAGATGGACCTCCCCAGCTCTGCAAAACAGATGAAATTGGAGAAATCTGTGTTAGCTCCAGAACTGGAGGCATGATGTACTTTGGGCTTGCTGGTGTGACAAAAAATACATTTGAG
Seq A exon
GTAATTCCAGTGAATTCTGCAGGCTCTCCTGTTGGGGATGTGCCATTCATCCGATCAGGATTGCTGGGGTTTGTAGGGCCG
Seq C2 exon
GGTAGTTTGGTGTTCGTGGTTGGGAAAATGGATGGCTTACTGATGGTTAGTGGTCGAAGACATAATGCTGATGACATTGTTGCTACTGGATTGGCTGTAGAATCAATAAAGACTGTTTATAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'46-51,'46-50,47-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
PF0050123=AMP-binding=FE(5.5=100)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCAGATGGACCTCCCCA
R:
CGACCACTAACCATCAGTAAGCC
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains