DreEX6081093 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27451735-27453124:-
Coord C1 exon
chr23:27452988-27453124
Coord A exon
chr23:27452300-27452380
Coord C2 exon
chr23:27451735-27451862
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCTGATCTGATTGGCCACAGGTG
3' ss Score
7.94
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
CTCTGATGTGTATTGTGAAGCCTGATGGGCCGCCAATGCTCTGTAAGACTGATGAAATCGGAGAGATTGTGTTGAACTCACGAGCCGGAGGCACCATGTACTACGGCCTGCCTGGGGTGACCAAAAACACTTTTGAG
Seq A exon
GTGATTCCTGTAAACTCAGGTGGTACCCCGATAGGAGACGTTCCCTTCACACGCACTGGACTTTTGGGCTTTGTGGGTCCG
Seq C2 exon
GGAAGTTTGGTGTTTGTGGTGGGAAAGATCGAGGGTCTGCTTAGTGTCAGTGGTCGCAGACACAATGCAGATGACCTGGTGGCCACAGCACTGGCAGTGGAGCCAGTCAAAACCGTTTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'27-23,'27-22,28-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
PF0050123=AMP-binding=FE(5.5=100)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAATGCTCTGTAAGACT
R:
TGTCTGCGACCACTGACACTA
Band lengths:
170-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]