GgaEX0008721 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:141406-142354:-
Coord C1 exon
chrE22C19W28_E50C23:142218-142354
Coord A exon
chrE22C19W28_E50C23:141826-141906
Coord C2 exon
chrE22C19W28_E50C23:141406-141533
Length
81 bp
Sequences
Splice sites
3' ss Seq
CGTCCTTCCTTCTGTTGCAGGTT
3' ss Score
12.98
5' ss Seq
CCTGTATGT
5' ss Score
4.27
Exon sequences
Seq C1 exon
GAATGATGTGTATAGTGAAACCCGATGGAGCACCTCAGCTGTGTAAAACAGATGAGATTGGAGAAATCTGTGTTAGCTCCAGAGCAGGAGGAATGATGTATTACGGGCTGGCAGGGCTGACAAAGAGTACATTTGAG
Seq A exon
GTTATTCCTCTGAACTCAGCTGGCTCTCCAGTGGGTGATGTGCCATTTGTCCGTTCTGGCTTGCTGGGCTTTGTTGGACCT
Seq C2 exon
GGCAGTTTGGTGTTTGTGGTTGGAAAAATGGATGGATTGCTGACAGTCAGTGGGCGGAGACACAATGCTGATGACATTGTCGCAACTGGGTTGGCAGTAGAGTCAATAAAAACAGTTTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'22-26,'22-25,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
PF0050123=AMP-binding=FE(5.5=100)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCACCTCAGCTGTGTA
R:
CATTGTGTCTCCGCCCACTG
Band lengths:
180-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]