BtaEX6020707 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29387173-29393295:-
Coord C1 exon
chr5:29393159-29393295
Coord A exon
chr5:29389356-29389436
Coord C2 exon
chr5:29387173-29387300
Length
81 bp
Sequences
Splice sites
3' ss Seq
CACTTTCTTTTGCCTTTTAGGTG
3' ss Score
11.72
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GGATGATGTGCATTGTGAAACCCGATGGACCTCCTCAACTCTGCAAAACAGATGAAATTGGAGAAATCTGTGTCAGCTCCAGGACAGGAGGCATGATGTACTTTGGGCTTGCTGGGGTGACCAAAAACACATTTGAG
Seq A exon
GTGATTCCAGTGAATTCTGCCGGCTCTCCTGTTGGAGACGTACCGTTCATCCGGTCGGGATTGTTGGGGTTTGTGGGGCCA
Seq C2 exon
GGCAGCTTGGTGTTTGTGGTTGGGAAAATGGATGGGTTACTGATGGTTAGTGGTCGAAGACATAATGCTGATGACATTGTTGCTACTGGACTGGCTGTTGAGTCAATAAAGACTGTTTACAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'23-24,'23-23,24-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
PF0050123=AMP-binding=FE(5.5=100)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGTCAGCTCCAGGACA
R:
TGACTCAACAGCCAGTCCAGT
Band lengths:
177-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]