MmuEX0014703 @ mm10
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
disco interacting protein 2 homolog B [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100175201-100181436:+
Coord C1 exon
chr15:100175201-100175337
Coord A exon
chr15:100178442-100178522
Coord C2 exon
chr15:100181309-100181436
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTTTGTCTTTTAGGTG
3' ss Score
13.85
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GCATGATGTGCATTGTGAAACCAGACGGACTTCCTCAGCTCTGCAGGACAGATGAGATTGGAGAGATCTGTGTCAGCTCCAGGACTGGAGGGATGATGTACTTTGGACTTGCTGGTGTGACCAAAAATACATTTGAG
Seq A exon
GTGATTCCAGTGACTTCTTCAGGCTCTCCTGTAGGGGACGTACCCTTCATCCGGTCAGGGCTGCTGGGATTTGTAGGGCCT
Seq C2 exon
GGTAGCTTGGTGTTCGTGGTTGGAAAAATGGATGGATTACTCATGGTCAGCGGCCGAAGACATAACGCCGATGACATTGTTGCTACTGGATTGGCTGTGGAGTCCATAAAGACCGTCTATCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'41-32,'41-30,44-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
PF0050123=AMP-binding=PD(5.5=92.6)
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGACTTCCTCAGCTCTG
R:
GCCGCTGACCATGAGTAATCC
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types