GgaINT0051025 @ galGal3
Intron Retention
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6922752-6923071:-
Coord C1 exon
chr7:6922991-6923071
Coord A exon
chr7:6922880-6922990
Coord C2 exon
chr7:6922752-6922879
Length
111 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TAATTTGGTATTCTTTTCAGGAC
3' ss Score
8.53
Exon sequences
Seq C1 exon
GCCGTTCCAGTGACAGCCAGTGGTGTACCTGTTTCAGATCAGCCCTTTACAAGAACAGGACTTCTTGGCTTCGTGGGTCCT
Seq A exon
GTAAGTTTGAATGAGCAATCTTGGCCTCGCTTTGTCCTGACACCCCGCTCTGAGTGATGGAGAAGTCAGGAAGTTATTTCTACTTTCTTTCTAATTTGGTATTCTTTTCAG
Seq C2 exon
GACTATCTGGTGTTTGTGGTAGGAAAATTGGATGGCCTAATAACAGTTAGTGGTCGCAGACATAATGCAGATGATGTGGTAGCCACAGCACTGGCAGTAGAACCAATGAAATTTGTCTACCGGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228:ENSGALT00000010067:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.5=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCCAGTGACAGCCAGTG
R:
TCCCCGGTAGACAAATTTCATTGG
Band lengths:
205-316
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]