MmuINT0049543 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75748271-75749187:-
Coord C1 exon
chr10:75749107-75749187
Coord A exon
chr10:75748399-75749106
Coord C2 exon
chr10:75748271-75748398
Length
708 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTGACACACCCTTTCCTCAGGAT
3' ss Score
8.87
Exon sequences
Seq C1 exon
ACCGTCCCGGTCACTGCGGACGGAGTCCCTGTCTCTGACCGGCCTTTCACCAGGACAGGCCTTCTGGGATTTATCGGACCT
Seq A exon
GTGAGTATGAGTGTGACCTCCTATACCCGCCCAGCTGCAGAGAGCGCTGGCGGAGGAAAGGAACGCTGCTCTGTAAACACGCTCCTGTCCCCAGTGTCCTAGGTTCTCAGTGTGACCTTGGCCTGTCGTGCTGACCACCCTGGCCTGCTTCTGACCTGCATGTACTGTTTCTCCAGCCACCGACCCACAGTGGGCCCCGGGTGCGAAACGAAGTGGGGGTGATTTTGTTTTTATCATTTTTTTCCAGTTTTGATATTTAAAATGATAAAATGAATACATCTGCAGCATCTAGGCCCACCTCTTCTCAGGTGGATGCGTGTGTCCTTTCCCAGAAACATTGGTTGTCACAGCTCAGGGACGGGCTCACTCCCTTGTGGGTGTCTGCAGGCCAGAACTGCTTAGTACCAGCTAGTGTAATGTGGCGGTGTCTGTAGCTACATAGTTAGCTCATGGGTCACATGACACACCATGAGGCCTTGCCCTTGTTGGAGCATCTCAGAGTCGTTCACACACCCACCCATGACTTTATAGCCCTTTAACATTGATGCCCCTTTCCCACCCTTCAGTGCTGCCCTCTCTTCACCCATGTGATCTGTCCCACCCGACCTGAGTGTACTGAGGGGTGCAGTCGCTTGTTGACCCTGTGAGGAGCTGTATTCGTTGTGTTCTCCAATCCCTCTCCTGAGGCCTGACACACCCTTTCCTCAG
Seq C2 exon
GATAACCTGGTCTTCGTCGTGGGCAAGTTGGACGGGCTGATGGTCGTAGGAGTCCGCAGACACAATGCAGATGACATTGTGGCTACTGCCCTGGCTGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PD(8.3=25.0)
A:
NA
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCGGTCACTGCGGAC
R:
CTGCCTCTGTAGACAAACTTCA
Band lengths:
206-914
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: