BtaINT0049279 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147942740-147943378:+
Coord C1 exon
chr1:147942740-147942820
Coord A exon
chr1:147942821-147943250
Coord C2 exon
chr1:147943251-147943378
Length
430 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ACCAGCGTCCTTGCCTTCAGGAT
3' ss Score
9.33
Exon sequences
Seq C1 exon
ACTGTCCCGGTCACCGCTGGGGGCGCACCTGTCTCCGACCGACCTTTCACCAGGACAGGGCTTCTGGGCTTCATCGGGCCT
Seq A exon
GTGAGTGTGTCCTGCTGCCAAACCCGGGCCACCAGCCAGGCTCAGAGCTGGGGAGGGGTCTGTTCAATGTCCACAGTGCCCAGGCCCCATGACGGAGTCCCATCTTGCCCAACCATCAGTGCTGTCGGGCTGGGGTTCCCTGTCCCTAGCCTTGAGTGCTTTACAGACTTGACCCTCGCTGTGTGCCCACCTCTGACCTTCCCTGCGCTGACGCCTGCTCTGGACGCCCCCTCATCCCCACTCTGGCACACCAGGCTTAGGGCCCCTTCACCCCAGGTCAGCCCACCTGTGTTTCCTGTCACCGTGGGCAGGGGGCCTGCAGGGCCTGTCTGTGAGTTACCTGGTCTGTGGGCTGTCGGGTCTCTGTCTCAGGCCCTGAGCCACGGGGCCTGCTGTGTGTCCTCTGCCCAACCAGCGTCCTTGCCTTCAG
Seq C2 exon
GATGACCTGGTCTTCGTCGTGGGCAAGCTGGACGGGCTGATGGTGGTGGGATTTCGCAGACACAACGCGGATGACGTGGTGGCCACTGCGCTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.5=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCGGTCACCGCTG
R:
TGCCTCTGTAGACAAACTTCATGG
Band lengths:
207-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development