HsaINT1011084 @ hg38
Intron Retention
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46545881-46547042:+
Coord C1 exon
chr21:46545881-46545961
Coord A exon
chr21:46545962-46546914
Coord C2 exon
chr21:46546915-46547042
Length
953 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
ACGCACACCCTTTCCCTCAGGAC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GCAGTTCCGGTCACCACAGGAGGAGCACCCATCTTTGACAGGCCATTCACCAGGACAGGCCTGCTGGGCTTCATCGGGCCT
Seq A exon
GTGAGTATGTCCTCCTGTACCAGCACTGGCAGTCAGAGAAGGTAGGGGGTGTGGCTAAGGGACACCTCGTTGCAGCCCCACCCTTGTCCTGGCCGTTCCTGACCTCCCATGTGGCCTTGGTCGGTGGCGCTGACCTCCCTGCCCATCACCCTACCTGTGTGCAGGGCCATCCACACCTCCGAGACTGGTGCACAGTCCTGCACACAGGCCTGAGTCGGGGGTCCCCGGGGTGGATGAGGATGTTTTGCTTTTTATATGGAGTGGCAGGTTTGTGAGTATTCATTATATCATTCTTTACCATTTTGGATGTCTAAACTATTCAAAAATAAATGCTTCTATTTGTAACATCTTGGCCCAGTGTTTCTCTCAACTGGGCAATTTTGCCCCTTCCCTCCCAGGGGACTTCTGGCAACTTTTGAAGACATTTTTGCTTGTCACAACTCAAGGGAGGGGAGTGCTCCTGGCATCTAGTGAGTACCTAGAGGCCAGAGATGCTGCTCAGTGTCCAACCTAAGCACAGGACAGCACCTGCGATGGTATTGTCAGCCCAGAAGGTCCCTGGTGCCGGGTTTGGGACCCCTGCCCTTAGCTCAGCAGTTTTCAGTCCTTCACAAACTCCACCCACAACTCGTTTCCCACTTGTGAGCCTTTCCCATGCTGACGCTGCCCCAGCAGCCCCACTTTCTTTCACATAGCCTGCCCCTTTCCCATGTTGCCTCCCTTCCTGATGCTGCCCCACCAGCCCCCATTCCTTCCACACAGCCTGCCCCTGTTCCAGGCCTAGCTTGTCACAGGGCCTGCGTTGCAGATTGGGTCTGTGGGGCATTGACCCGTTTGCAAGGCGCTAGAGGCTCCTGTGCTGTTGGCCCCTTCTTGGGGGGCCTGACCATGGTCCTGGCGCATCCAGCTTCTGCCCGTGTGGGTGGAGTCTTGACGCACACCCTTTCCCTCAG
Seq C2 exon
GACAACCTGGTCTTCATCGTGGGCAAACTGGACGGGCTGATGGTCACTGGAGTTCGCAGACACAATGCAGATGACGTTGTGGCCACCGCACTGGCCGTGGAGCCCATGAAGTTTGTCTACAGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305:ENST00000400274:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(5.5=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(3.4=37.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCCGGTCACCACAGGAG
R:
TGCCTCTGTAGACAAACTTCATGG
Band lengths:
206-1159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains