GgaINT0051513 @ galGal3
Intron Retention
Gene
ENSGALG00000006717 | MUC5B
Description
NA
Coordinates
chr5:15992401-15993799:-
Coord C1 exon
chr5:15993712-15993799
Coord A exon
chr5:15992535-15993711
Coord C2 exon
chr5:15992401-15992534
Length
1177 bp
Sequences
Splice sites
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
3' ss Seq
TGAATCTGGGGATTTTGCAGGAT
3' ss Score
5.34
Exon sequences
Seq C1 exon
CTGGACCTGGAAGAAACATATAAAGAGAAAATATGTGGTCTGTGTGGGAACTATGATGGCAATAAGAAGAATGATTTAATTTTGGACG
Seq A exon
GTAGGCCATGAACACAGCATGTTGAATGTAGGAGTGTGTTATAGATCACATGAAACTTGGCATCTGTTTTCTCTATGTGGGATTTCAGATTTCTGGACAGACATCTTGAAATACCCAAACATTTCCATAGATGGAGCAATTTAAAAGTTTGTGGGATGATCTGAGATTCTCTGCTGCTTGCAAGTGTCTCTCAAACCTCGCTGACCCAATTTAATTGCAGCAGTACTGCCAAGTTTCCCACTGACTGTATCAAACTTTAAGGAATTTGCAGTCTCAAATGAGGCATGATTGCACTTCTGCCCTTCTGCTTTCATCACTTTGCAGTTAGATATCAGGTATGATTAGTTTTGGCTATGTAATGAAACAAAAGTGCCATGAGTGACCCAGGAAGATTTCACTGAGCATCTTTGCAGAAACCACGGTGCCATCCACTGATACCTTCAGGTGCAGTTCTGGGCTGGAAGGAGGGCAGCACAGCAAACAGCTGAGGCTGCAGTCCTGCAGCAGGATGTGAGTGTCAAGAAGCTTGCACTCTATTGTATTTTCTGCAGGACTGAAGCCAAATTTTTATTTTATATATCCCTTTGTGTAATACCTGGGCTTTTTAAGTCACAAAAAAATATGGCCACCTACCATTCAGAATGAATAATTAAATTTCAAACTTTGTCAGAAGGATTTCACAGATCTAGGATCAAGTGGCTGGTAATGCTTTGGGAAAATATGTCCCTATACTCTCTGTAATACGAACATTGTGTGCCTGTCTTCCCAGCTTCTTTAGCCTGTACAGAGCAGCAAGTTACTGGATGACTACACATGCATCCAAATCTGTGCTTTAGGTTGCAATAATATAATGCAAACTGATCTGTATGACCATTACACGTACAAATACAAAATTCTGTAAGATCACATGTACTCATAAGTCTTTGAAAGTGATGCAATGTAATAGAAAGGTCAAGAGTCTCATGTGATTATCGTTGCCAAGACTGTCAGCAGTTCTTGATAGAAATATGCCAGATTCCTGATCATAACCCAAATGGAAGTTACACCAGAAAGTTATATGCTGTGTTATGGTTAAGTAAATTTGGTAAAGATTTGGTAAAGATGAGGTACATATTTATAGAAAAACTGATCTAAGTGATTGTAGGCAGTTATTCAGATGAATCTGGGGATTTTGCAG
Seq C2 exon
GATATAAAATGCACCCAAGGCAGTTTGGGAACTTTCACAAAGTTGAGGATCCATCAGAAAAGTGTCCTGATGTGAGGCCAGATGACCACACTGGAAGACATCCTACAGAGGATGACAATAGATGCAGTAAATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006717:ENSGALT00000010866:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.267
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(19.6=93.3)
A:
NA
C2:
PF087426=C8=PU(3.8=6.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTGGAAGAAACATATAAAGA
R:
ACTGCATCTATTGTCATCCTCTGT
Band lengths:
215-1392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]