GgaINT0053530 @ galGal3
Intron Retention
Gene
ENSGALG00000012394 | NID2
Description
NA
Coordinates
chr5:60682173-60683018:-
Coord C1 exon
chr5:60682895-60683018
Coord A exon
chr5:60682286-60682894
Coord C2 exon
chr5:60682173-60682285
Length
609 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CAGTTTTCCTCTCTCCACAGTGA
3' ss Score
9.82
Exon sequences
Seq C1 exon
GCACGAAGAAGCTGGAGTGCACGTTCCCTGACGGAGCAGGCAGGCGCATCATACACAACAACCTCAACTACCCCTTCAGCATCATTAGTTACGCCAGTCACTTCTACCACACCGACTGGAGACG
Seq A exon
GTAAGGGGGGAAAACCCACTCCAGCAGGGGAAAACAAGTGCTGCCACGGGCCTGAAACCTCACCAGAATCCTGGCCTCAGCCCTCTGCAGCGCCATGCTGGGCAGCAGCTGCTTGTAAAGCTTCCTTATTGCACAGAACAAACAGTTGTTTAGAAACAACTCCATCTTCCTGGGAGGGAAAGAAATACTGTGGTTGTTTTTTTTTTTTCTAACTAGAACTTGGCCCAAGGGTTTGAATCCAGATTAAGTGAAAGAAAAGATGCTGTCCTCAGTTGTTCCCTCTCCCCACCACCAAAGGCATCGGGGTCATCAGGACCTCGCCTCTATTCCCGCTCCAGCTGGAAGCTCTCAAACTTCAGTCACATCTTAGCAGATTATAACAAACACTTAAGTGCTGGCCACACTTGGACGAGGCTCTCGGGGAGATAATCTCTCCTTGGAAGGCTGGCTCTGTGATTCTGCAGCAGCAGCGTGCTGAGGGAGCTGCACACGGAAGCCGTGGGGCATGTTTCTTTTGATTTGTTCTGCAGGTGTTCAGCCCTCTCTTTGTAGCTGCCTCCGTCCTTAACTGCACCTAGATGGGATATAACAGTTTTCCTCTCTCCACAG
Seq C2 exon
TGATGGTGTGATTGCTGTCAATAAAGAAACCGGCTCCTTCACCGACGAGTACCTTCCAGAGCACCGATCGCACCTCTATGGCATCACAGCAGTTTATCCCTACTGCCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394:ENSGALT00000020241:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTGGAGTGCACGTTC
R:
TCCAGGGCAGTAGGGATAAACT
Band lengths:
231-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]