HsaINT0113501 @ hg38
Intron Retention
Gene
ENSG00000087303 | NID2
Description
nidogen 2 [Source:HGNC Symbol;Acc:HGNC:13389]
Coordinates
chr14:52005737-52006660:-
Coord C1 exon
chr14:52006537-52006660
Coord A exon
chr14:52005850-52006536
Coord C2 exon
chr14:52005737-52005849
Length
687 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTCTTCCTTTCTGTTACCAGGGA
3' ss Score
10.26
Exon sequences
Seq C1 exon
GAACCAAAAAACTGGAGTGTACACTACCTGATGGAACTGGACGGCGTGTCATTCAAAACAACCTCAAGTACCCCTTCAGCATCGTAAGCTATGCAGATCACTTCTACCACACAGACTGGAGGAG
Seq A exon
GTGAGCCCCACAAATTCTGGACAAGCCTGAAAAGGCCAACTGTTCCAGAGGACACACCACTTGTTTTACCAAAAGTCAGTACCTGACTTGACTCATTAAGCCCTCTGAGGCTTTTGTTTCATCACCTCCTCATTGGCAGATAAGATCCTTCAAGGATGTTTTTCATCCTTTCATGTTTTTGAAATCATCCTTTTACTTCACCCAGAAATCGAATGGTATTGCTCACATATAGCTTAAAAAGTAGCAAAGCTATTGGATAATGTCTCAAAAGGGAGCATATTAATCTAAATATGTTCTTTAGAGAATAAGACTACCCTTGATACCATGAGCTATATTACAGGGCTTAAGTTGGCTTTTGACACTGTGGACATATTGTCTGAGGGACCGAAAAATACTATTTAGACTAGTTCTCAAATGAGGAACTGTGGAACATTAAAGTCTAAGCCCTTTACACCATGCCCTACAACTCTGATTTGATAGCTCATCATGTGATTCTAACATGCAGCTAGAGATGAGCAATGGATTTAGAGCAATGGTCTTCAAACTTCAGTATGGCTTTAGCACCAGCCCTGGGACAGAGAAGGCTGCCAGAAATTTTCCTCTATTGCAACTGATTTTCTGTGGCTGACTGACTTCTTTATCTAGTAAATGACTGTCCCTGAATTCACTCTTCCTTTCTGTTACCAG
Seq C2 exon
GGATGGTGTTGTATCAGTAAATAAACATAGTGGCCAGTTTACTGATGAGTATCTCCCAGAACAACGATCTCACCTCTACGGGATAACTGCAGTCTACCCCTACTGCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087303:ENST00000216286:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTGGAGTGTACACTACCTGA
R:
CTGTTGGGCAGTAGGGGTAGA
Band lengths:
230-917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development