RnoINT0101075 @ rn6
Intron Retention
Gene
ENSRNOG00000000341 | Nid2
Description
nidogen 2 [Source:RGD Symbol;Acc:1311685]
Coordinates
chr15:4894675-4895696:-
Coord C1 exon
chr15:4895573-4895696
Coord A exon
chr15:4894786-4895572
Coord C2 exon
chr15:4894675-4894785
Length
787 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CATGAATCTTCCTTTACCAGGGA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GAACCAAAAAACTGGAGTGTACACTACCTGATGGAACTGGACGCCGCGTCATCCAAAACCACCTCAATTACCCCTTCAGTGTTGTCAGTTACGCGGATCACTTCTACCACACGGACTGGCGGAG
Seq A exon
GTAAGCACGCTGCAGCAGCCCCGAAGGGCGGTGCGTTCTGGAGAACATGCCCCGAAGGGCAGTGCATTCTGACAGTCGGCAGCCTTGGCTGGAAGCCCTGTTGGACTTTTGTCCATTAGTAGACACAGGTCTTGCAAGGGTAACAACTTGCAATCATCCCTGTATTTTACCTCAAGTTTAATGGTGTTGCTAGTGGGCAACATGTACATTGAAGATATTTTGGTAATAAGCTATTTAATGAGAAGCATTTATTTAAGTAAGGTCTTAGAGAATCTGTAGTGTTAAGCGGTACAAACATCAATAAGCAGGACATGGTGGGGCATGCCTTTAACCAGCACTAGAGAGGCTGAGGCAGGAGGATCTGTTGAGTTTGAGGCAGGCCTGGTCTACAGAGCCAGGACTAAAAACAGGAATCCTGTTGAAAAAAATATCAGTAATCATCATCATCATCATCATCTAAGAACACTTCAAAACAGAACAAAGGCGCACTTCTGAATTTGTCTCTTTGTCCTACAATCTTCAGTACTTGAATGGACACCATGGGCCTAGCCAGAATCAGGAACTGATTTAACCACTGGTTCCTACGGCCACGGAACATTAAGTACATCCTGTGTGCTAACCCAGGGTTTTGACTTAGAGGAACAATAGTTTGCCTTTCCTGTAGGTGATGTTGGTGGAGCTACATCCAGGATCACTGGTATAGACACACTGAGTCAAAAATCATTCAACCGAATTGTTTCTGAAACTTTACCTTGAGACTGACCACCCATGAATCTTCCTTTACCAG
Seq C2 exon
GGATGGTGTTATATCAGTGAGTAAAGACAGTGGCCAGCTTACTGATGAGTATCTTCCTGAACAGCTCTCACCTCTATGGCATCACTGCAGTCTATCCCTACTGTCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000341:ENSRNOT00000000383:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGTGTACACTACCTGATGG
R:
TTGGACAGTAGGGATAGACTGCA
Band lengths:
222-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]