GgaINT0053588 @ galGal4
Intron Retention
Gene
ENSGALG00000009315 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:HGNC:19262]
Coordinates
chr5:25614442-25615909:-
Coord C1 exon
chr5:25615794-25615909
Coord A exon
chr5:25614503-25615793
Coord C2 exon
chr5:25614442-25614502
Length
1291 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GGGTTCTTTCGGTCTTTCAGGAC
3' ss Score
10.32
Exon sequences
Seq C1 exon
GGCCATAGGATGAAGCGGCAGACTGGTGTTTGGGGAAGCTGGGGTGAATGGGGCAAGTGCAGTCGGAGCTGTGGTGGCGGAGTCAGTGTTCGGCAACGGCACTGCTATTTCCAAAG
Seq A exon
GTAAGGTCTAACCTCATTTTTCTTTCTTCAAATGTATTCTTCTGCTACCATGCTCCTGTATGTATGGTCCCATATCCATTCAGAACCAAAATGGCATAATTCCATAGGAAGAAGTCATCTAAGTCCACTTCAGCACGATCCTTAGCTTTAGTCTCATCACTGCTCTTTTGAAGAAGACTGTCTTTAACATGTCTTTGCTTTGACTCCTTTGCTTGAATACAGTGATCTCTCTGAGATCTGAAGCTGTACAATGAGGTGACTGGTATGGCAGCACCTGTTCAATCAGGTCTAGTGTGGGAGACCTGGGGGAGTTGGAGGAGAGGTCAGAGCATTTGGTTGCTCTCTCAGGAGCCAGTGGCTATGCCAAGATTTTCTCAGGCTTATGATTTCCAGGAAGATAAATCACCCTAGTGAGTGGTGCAGGAGTGGAGTAGGCTCAAGCAAAGGTAACGCAGTGCCATTTCATCTGTAGCTGGTTGGATTAGTGATGACAATGACTAGAAGTGTACTTTTTGGGAATTATGAACCTGAGCGGTCCTGTTGTATAAAAAGCAAGAAAAGAAGAAAAACAAATTACCTTCACCGTCAATATCATCATGTGTAGGAGGGGGAGGGAAAAGAAACCACCTCACCCTGATTAAAGAAAGATCATCTTTGAAGGCTGCCCGTCATGGTATGCACTCATGTCTTGTTGCCTGATTAGAATTCTTGGGGACTTGTCTCTCCTTTTTAGAAGTGCTGAGATATTAGATTTTTGTTGACTTTTCAGATGAATATACTCCAGGGCTGTTATTCCCCATAATTCTCAGCTGAGAACATTTGACTGGAACCAGTGTTGCACACTCTTCATGGGCATCTTTGGCTCTCCCTAGGAATAGGCTTAGAGCACATATAAATAGCGCACAAAGTGATGTGCATACCTATTCTGAATTAGCCATTGCTGTTGTTCTCAGAATATATATGTGTATGGTAAGGATATGTCAGCTATATGCCAGTGGACAAAAGACCAAAAGTTTTGCTTCCATTACTTAGTGAAAACATAATGCCGAAGAGCTATGCTGTAGTTGTTTTATGTTTCATTCATGACAGATCGCAGTCTGTAGCAGAAAATAGCACTAGAAAATGCAAACTTGCCTTAGTAAGAAAAAAAAGTGCTTTTTCATTATTTTGCTGCTTCAGGAGACTGTGTAAATATTATATACTCTATGTGAAGGTTATTTGGGATATCTACCATGAGATGATTTTTTTTCCTGTGTTCAGACAGCTTAATTGGGTTCTTTCGGTCTTTCAG
Seq C2 exon
GACAGAAAGTGCTTCCAGTTGCATTGGACCAACTCGAAGCTATCGCTCATGCAATATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315:ENSGALT00000015156:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(54.0=69.2)
A:
NA
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]