HsaINT0120123 @ hg19
Intron Retention
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73711352-73712404:+
Coord C1 exon
chr14:73711352-73711467
Coord A exon
chr14:73711468-73712343
Coord C2 exon
chr14:73712344-73712404
Length
876 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
CCGGTGCTCTGGTCCCGCAGGAG
3' ss Score
9.48
Exon sequences
Seq C1 exon
GCTCCCAAGGTGAGGCGGCAGAGTGACACCTGGGGACCCTGGAGCCAGTGGAGCCCCTGCAGCCGGACCTGTGGAGGGGGTGTCAGCTTCCGGGAGCGCCCCTGCTACTCCCAGAG
Seq A exon
GTAGGAGAGATGAAAATGGGCCAGCTTGTTAAAGCAGGAGCAGGGGATGCTGCCTTCTGGGTGGTGGGCTAGGTGGTCGTGGCCTAGGCTAGCACTGGCCACATCAGCAGAACCCACCAAGGAGCAGATTCATTCTGGAAGCAGCATCAGTTCAGCGCAGGAAATCAAACCATTTCCCAGGGCCTTCCACTCTGAGCTGGAGCACGCGTGCTGCCTGTTGCCCCTGGTCTCCAGCTCCTGATGCTGCACCGGCCTGCAGTATGGCAGGTGCAGTCAATTTTGCTGGAACTGGTAAATAATCTTCAACCGGCAGTTCCCAATTCCTGTGGTTTCTTTACCGAGTACAGATGTTCCCCACTTCAAGCGATTTATTAAATGCTTGCTGTGTGTGCTGCACTCCGGCAGGGTCAGTGGAGAAGGTGGGGCACAGAAGGAGTAGTGAGGTGCCTCTGTCCCGGTTTGTATAGGGGTTGTTCCTGAGAACCCTATGTGAGGAGGAATGAGAGACCAGGAATGATCCTAAGAGCCTTATACTGATGTCCTGCTTAGATCGCAGGATGGCTGTGCCAAGCGGGTGGGTATTATATCTCATGCACCTCGGGTCTTCTCTGGGAATCTGCCTAAGATGCAGTGGAGTGGTCCCGCCTTAAATCCAAACTATAGGGTGGGTAGGGCTCTGAGTCCCGCTTCTCTGGAGTACCAACATGGGTCGCTCACTCCCACCTGGGGGATTTACGGGGTGGGGTCGGGGGACACCCTCTCACCTTGCTGCTCCCACTGGAGAGTCCCGCAGAAGTTGGGGCCTGCAGAGAGCCCCAGAACGGGGGCAGGGACGTTGGGTCTCGGTCAGGTCTTCCCGGTGCTCTGGTCCCGCAG
Seq C2 exon
GAGAGATGGAGGCTCCAGCTGCGTGGGCCCCGCCCGGAGCCACCGCTCTTGTCGCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-PAPLN:NM_173462:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PU(54.0=69.2)
A:
NA
C2:
PF0009014=TSP_1=FE(40.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)