GgaINT0054031 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:25848558-25848905:-
Coord C1 exon
chr5:25848769-25848905
Coord A exon
chr5:25848619-25848768
Coord C2 exon
chr5:25848558-25848618
Length
150 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CCCTGCGTTCTTTCCTTCAGCCC
3' ss Score
10.7
Exon sequences
Seq C1 exon
GAGGGCGCTGGGCAAGGGCAATGCTCAGGCCTCCGTGCTGCAGAGCCAGTGTGGGACAAGGTGAGAGGGGCGGCGGCAGCGGTGGAGGTGGAGGAGCAGTTCCTGCACTTGGCCATCAGGAAGCAGGTGTCCTACAG
Seq A exon
GTAGGAGCCCCGGGCTGTGTGCAGGGGTGCTGTGGGGCCTGGGCTGGGTGTAACGGATGGCTCTTCCCTCTGTCGGGGTTCTCACTGGGGTCACGCCCAAACTCCATTCCCAGAGCCAGGTGGTGCTCATCCCTGCGTTCTTTCCTTCAG
Seq C2 exon
CCCTGTCCTTGCACGGGAAAACAGGGAGCTCCCAGCAGGGAGAAGGAGCGGCGATGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000020464:ENSGALT00000013653:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.857
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGCAAGGGCAATGCTC
R:
GCATCGCCGCTCCTTCTC
Band lengths:
187-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]