BtaINT0048704 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77236630-77237788:+
Coord C1 exon
chr15:77236630-77237375
Coord A exon
chr15:77237376-77237679
Coord C2 exon
chr15:77237680-77237788
Length
304 bp
Sequences
Splice sites
5' ss Seq
TGCGTAGGT
5' ss Score
3.63
3' ss Seq
AGCCGTCTCCTCCTCCGCAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATGGAGACCTTCATTAAGAGACACTTCCAGCGGAAGGCGCCTGGCCCAGGGGAGGGGCCGAGGCGGCCCAGCGGTGTGGGGCTGCCCACAAGCAAGGCCCGGCGCCGCTCGCCCGCGGGGCAGGCCTCCTCCTCGCTGGCACAGCGGCGGCGCTCTAGCGCGCAGCTCCAGGGCTGTCTCCTGGGCTGTGGGGTAGGGGCCCCGCGCCCCGGCCGCCGCCGGCGCTCCAGCACCGCGCCCCCCGCCTGCAATCCCCGCTTTGCCGTGGAGGAGGTGCCCACCCAGCCGCAGCCAGCCGTGGTGGGGCCCCAGCTTTTGGTGGCACCCCTGCTGTTGGCTGGGCTCGTGGGCATGGAAGACGAGGAGGGCTTGCAGAAGGAGGATGTGAGGGTCGCGTTGCCGAGTGCCGCCCAGCCGGGCTCCGGGACCCCAGGGCCATCCCCACCGCCGCCCCGCAGCGCGCTGCCCCTGCTGCCCGTTCCGCGCTGGCGCCGGCGCCGGGCCTCCTCCCAGCTGCTGCCCGCAGACGTGGTGAAAGACCATGGGCTCTGGGGCCTGCACGGTCACTACCGACGCCTCAGCCAGCCGCGGCCCGTGAGCCAGAACCCCACCCCAGGGGGTCGAAGAGCCTCGGGTACCGCAGCCGGCCTCGGGATGCCCGCCCGCGTGCGCCCGCTGTGCCGCCGGCGGCAGGTAGCCCTGCGGCGCAAGTCAGCCGGACCCCAGACCTGGAGTGCCCTGCTTGC
Seq A exon
GTAGGTATAGCTGCAGCCAGCAGGGCAGTGGTGTGACCTCCGGGGGGGCTGGCCCGAGGGTCCCCAGCTCGGCAGCAGCTCTGGGCCAGGCTCGGAAGCCAGCAGGGCAGCAAGGAGAGTCCAGTCTCCTCGGGGATCCTCTCAGAGTTGGGCGGGAGGGGGCGGGGGTTCTCCTGGGAGCCTCCTCTGCCCTCCCTGCCTTGACCCAGGGTTGAGGTCAAGGTGAAGGCAGAGATCCCAGGCGAGAGGAAGGAAGCAGGGGCGCTGCGCGCCCAGCTGGCCTCAGCCGTCTCCTCCTCCGCAG
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCTGCTCCTGGGGCCCCGTGCAGCGAGCCTGAGCGGCAGATCCGGAGCACCGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636:ENSBTAT00000018128:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.595
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCCCAGCTGCTGCC
R:
ACTCCAGTCCACGGTGCTC
Band lengths:
352-656
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development