HsaINT0047404 @ hg19
Intron Retention
Gene
ENSG00000149091 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:2857]
Coordinates
chr11:46387794-46388949:+
Coord C1 exon
chr11:46387794-46388534
Coord A exon
chr11:46388535-46388840
Coord C2 exon
chr11:46388841-46388949
Length
306 bp
Sequences
Splice sites
5' ss Seq
CGCGTAGGT
5' ss Score
4.99
3' ss Seq
AGCTGTCTTCTCCTCTCTAGGAA
3' ss Score
10.85
Exon sequences
Seq C1 exon
CCAACCGCCTGCCATGGAGACTTTCTTTAGGAGACATTTCCGGGGGAAGGTGCCAGGCCCTGGAGAGGGGCAGCAGCGGCCCAGCAGCGTGGGGCTGCCCACAGGCAAGGCCCGGCGTCGCTCCCCCGCTGGGCAGGCCTCCTCCTCACTGGCACAGCGGCGCCGCTCCAGCGCCCAGCTCCAGGGCTGCCTCCTGAGTTGCGGGGTGAGGGCCCAGGGTTCCAGCCGCCGGCGCTCCAGCACTGTGCCCCCTTCCTGCAACCCCCGCTTCATCGTGGATAAGGTGCTCACTCCACAGCCTACCACCGTGGGGGCCCAGCTTCTGGGTGCACCCCTGCTGTTGACCGGGCTTGTGGGCATGAATGAGGAGGAGGGTGTCCAGGAGGATGTGGTAGCCGAGGCATCGAGCGCCATCCAGCCAGGCACCAAGACACCAGGGCCACCCCCACCTCGGGGCGCCCAGCCGCTGTTGCCCCTACCCCGCTACCTGCGCCGAGCCTCCTCCCACCTGCTCCCCGCGGATGCCGTATATGACCACGCTCTCTGGGGCCTGCACGGCTACTATCGGCGCCTCAGCCAGCGGCGGCCCTCAGGCCAGCACCCTGGCCCTGGGGGCCGAAGAGCCTCAGGCACCACCGCCGGCACCATGCTGCCCACCCGTGTGCGCCCACTGTCCCGCAGGCGCCAGGTAGCCCTACGGCGCAAGGCGGCCGGACCCCAGGCCTGGAGCGCCCTGCTCGC
Seq A exon
GTAGGTATAGCTGTGGCCAGCAGGGCGAGTGGTGTGACCTCCTGTGGGTCTGGCCTGGGCATGGGCCTTGAAGCTCTGCCTGGCTGAGGGTTCCCCACTTGGGAACACTCTGGGCAGTACCCTGAAGCCAGCGTACCCCAAAAGGCCATGTCTCTTGCAGGGAGCCTCTTAGTGTCTGGGGCTGCTGGGAGGCTCCTCCGCCCTCCCTGTTGCCGAGGTCACGGAAAGGGCAGAGGCCCCAGGAGGTGGGAGGAAGTAGGGTCAGCAAGTGCTCAGCCCCCTCCTCAGCTGTCTTCTCCTCTCTAG
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCCCCCCCTCCGCCCACCCCTGGGGCCCCGTGCAGCGAGTCAGAGCGGCAGATCCGGAGTACAGTGGACTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149091-DGKZ:NM_001105540:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.643 A=NA C2=0.637
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCAGCCAGGCACCAAG
R:
CCCGACTTGGTGATGGCTTTC
Band lengths:
351-657
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)