MmuINT0048904 @ mm9
Intron Retention
Gene
ENSMUSG00000040479 | Dgkz
Description
diacylglycerol kinase zeta [Source:MGI Symbol;Acc:MGI:1278339]
Coordinates
chr2:91784918-91786081:-
Coord C1 exon
chr2:91785331-91786081
Coord A exon
chr2:91785027-91785330
Coord C2 exon
chr2:91784918-91785026
Length
304 bp
Sequences
Splice sites
5' ss Seq
TATGTAGGT
5' ss Score
2.16
3' ss Seq
AGCTGTCCTCCTTTCTGTAGGAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
CCCCTGGCATGGAGACCTTCTTTAGGAAGCATTTCCAACGAAAGGCACGAGGTCCCGGAGAGAGGCAGCGGCGGTCCAGTGGCGTGGGGCTGCCCACAGGCAAGGCTCGACGCCGCTCCCCTGCAGGGCAGGCGTCCTCTTCACTGGCCCAGAGGCGCCGCTCCAGTGCACAGCTCCAGGGCTGTTTTCCCAGCTGCGGGGTGGGCACGAGAGGTGCCAGCCGCAGGCGATCCAGCACTGCACCCCCTACCTGCAATCCCCGCTTCATGGTGGATGTGGTGCCTACCCTACAGCCTGTCACAGTTGGGGCCCAGCTTCTGGGTGCACCCCTGCTGTTGGCTGGGCTCACAAGCATGAAGGAGGAAGAGGAGGAGGAAGGGGTCCAGGAGGGAAATGAGACAGCTGAGGCGACAAGTGATGCTAGGCCAGGTACCCGGACAACGCCCTTCTCACACCAGGGCACCTGGCCACTGCTTCCCATGCCCCGCTGCCTGCGTCGAGCCTCCTCCCACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACCCTTTGGGGCCTGCATGGTCACTATCGACGCCTCAGCCAGCGGTGGCCCTCAGGCCAGCACCCTGGTCTTGGGGGCCGAAGCCCAAGAGCCTCGGGCGCTGCAGCATGCCCCATGATACCGGCCCGTGTGCGCCCACTGTCTCGCAGACGCCAGGTAGCTCTAAGGCGGAAGTCAGCTGGACCCCAGCCCTGGAGCACCCTGCTTAT
Seq A exon
GTAGGTATAGCAGCAGCCAGCAGGGCAAGTGGTGTAGCCTCCGAGGTCTGGCTCAGAGTGATGACTTTGAAGCTCTGCCTAAGCCTGGGGTAGACTACTTGGAGGTAGCTCCGGGTAGAACTGGAAGAAGGGCCTAAGAGGAGCTACATTTCATTAAGAGCCTCAAGGCGCATGAGCTGCTGTGGGCTTTTCTATCTTGTACTCTGTGAAAGTCAAGAGAGGCAGTTTTGCTGGGTAGTAGGGAAGGAAGGAGAGTCAGCAAGCACCTGGCTGGCCCAGGCTTCAGCTGTCCTCCTTTCTGTAG
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACTGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040479-Dgkz:NM_001166597:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.687 A=NA C2=0.730
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTGCTGATGTGGAGTGT
R:
ACTCCAGTCCACAGTGCTCTG
Band lengths:
345-649
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: