BtaEX0011214 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013636 | DGKZ
Description
diacylglycerol kinase, zeta [Source:HGNC Symbol;Acc:HGNC:2857]
Coordinates
chr15:77218860-77237788:+
Coord C1 exon
chr15:77218860-77219282
Coord A exon
chr15:77236611-77237375
Coord C2 exon
chr15:77237680-77237788
Length
765 bp
Sequences
Splice sites
3' ss Seq
CCGGTCTCTGTGCCCAACAGCCA
3' ss Score
6.84
5' ss Seq
TGCGTAGGT
5' ss Score
3.63
Exon sequences
Seq C1 exon
GGGCGTGCTCGGCGGCGGGGCAGGCAGCGGCCCGGCCAGCTATGCGGGGTCCTGCGGCCGCAGCTGGCGGCACTTCCTGGAGCCGCAGCGGCCGCTTCCCCGGCACCTGGGCGTGGGGCGCGGGGGCGCGCGGCGCGGGGCGGGCGGAGTCAGCGCGCGCCATGGCCGAGGCGGGCGCTGAGGAGCCGGCGTGCTGAGCCCCGGCCGCCGGCCCAGCATGGGCGTCTCCCGCGGGCCCGCCGCCGGCCGGGGCTAGGGCCGGATGGAGCCGCGGGACGGCAGCCCCGAGGCCCGGAGCAGCGACTCCGAGTCGGCCTCCGCCTCGTCCAGCGGCTCCGAGCGCGACGCGGGTCCCGAGCCGGACAAGGCGCCGCGGCGTCTCAGCAAGCGGCGCTTCCCAGGGCTGCGGCTTTTCGGGCACAG
Seq A exon
CCACCCGCCTGCCCCTGCCATGGAGACCTTCATTAAGAGACACTTCCAGCGGAAGGCGCCTGGCCCAGGGGAGGGGCCGAGGCGGCCCAGCGGTGTGGGGCTGCCCACAAGCAAGGCCCGGCGCCGCTCGCCCGCGGGGCAGGCCTCCTCCTCGCTGGCACAGCGGCGGCGCTCTAGCGCGCAGCTCCAGGGCTGTCTCCTGGGCTGTGGGGTAGGGGCCCCGCGCCCCGGCCGCCGCCGGCGCTCCAGCACCGCGCCCCCCGCCTGCAATCCCCGCTTTGCCGTGGAGGAGGTGCCCACCCAGCCGCAGCCAGCCGTGGTGGGGCCCCAGCTTTTGGTGGCACCCCTGCTGTTGGCTGGGCTCGTGGGCATGGAAGACGAGGAGGGCTTGCAGAAGGAGGATGTGAGGGTCGCGTTGCCGAGTGCCGCCCAGCCGGGCTCCGGGACCCCAGGGCCATCCCCACCGCCGCCCCGCAGCGCGCTGCCCCTGCTGCCCGTTCCGCGCTGGCGCCGGCGCCGGGCCTCCTCCCAGCTGCTGCCCGCAGACGTGGTGAAAGACCATGGGCTCTGGGGCCTGCACGGTCACTACCGACGCCTCAGCCAGCCGCGGCCCGTGAGCCAGAACCCCACCCCAGGGGGTCGAAGAGCCTCGGGTACCGCAGCCGGCCTCGGGATGCCCGCCCGCGTGCGCCCGCTGTGCCGCCGGCGGCAGGTAGCCCTGCGGCGCAAGTCAGCCGGACCCCAGACCTGGAGTGCCCTGCTTGC
Seq C2 exon
GAAAGCCATCACCAAGTCGGGCCTCCAGCACCTGGCACCCCCTCCTCCTGCTCCTGGGGCCCCGTGCAGCGAGCCTGAGCGGCAGATCCGGAGCACCGTGGACTGGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013636_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.783 C2=0.595
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCCTGGAGCCGCAG
R:
CCCGACTTGGTGATGGCTTTC
Band lengths:
374-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development